diff options
Diffstat (limited to 'sci-biology/polyphen/polyphen-2.2.2.ebuild')
| -rw-r--r-- | sci-biology/polyphen/polyphen-2.2.2.ebuild | 56 |
1 files changed, 0 insertions, 56 deletions
diff --git a/sci-biology/polyphen/polyphen-2.2.2.ebuild b/sci-biology/polyphen/polyphen-2.2.2.ebuild deleted file mode 100644 index 3100c6bbd..000000000 --- a/sci-biology/polyphen/polyphen-2.2.2.ebuild +++ /dev/null @@ -1,56 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Predict effect of aminoacid substitution on human protein function" -HOMEPAGE="http://genetics.bwh.harvard.edu/pph2/dokuwiki/start" -SRC_URI=" - http://genetics.bwh.harvard.edu/pph2/dokuwiki/_media/polyphen-${PV}r405d.tar.gz - http://mafft.cbrc.jp/alignment/software/mafft-7.221-without-extensions-src.tgz - http://prdownloads.sourceforge.net/weka/weka-3-6-12.zip -" - -LICENSE="polyphen" # for non-commercial use only -SLOT="0" -KEYWORDS="~amd64" - -DEPEND=" - dev-perl/CGI - sci-biology/ncbi-blast+ -" -RDEPEND="${DEPEND}" -BDEPEND="app-arch/unzip" - -# 3.7GB -# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-databases-2011_12.tar.bz2 - -# 2.4GB -# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-alignments-mlc-2011_12.tar.bz2 - -# 895MB -# ftp://genetics.bwh.harvard.edu/pph2/bundled/polyphen-2.2.2-alignments-multiz-2009_10.tar.bz2 - -src_unpack() { - unpack "polyphen-${PV}r405d.tar.gz" - cp "${DISTDIR}/mafft-7.221-without-extensions-src.tgz" "${S}/src" || die - cp "${DISTDIR}/weka-3-6-12.zip" "${S}/src" || die -} - -src_configure() { - # non-standard configure script - ./configure -} - -src_compile() { - pushd src - emake -j1 - popd -} - -src_install() { - pushd src - default - popd - einstalldocs -} |