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Diffstat (limited to 'sci-biology/pufferfish/pufferfish-1.4.0.ebuild')
-rw-r--r--sci-biology/pufferfish/pufferfish-1.4.0.ebuild35
1 files changed, 0 insertions, 35 deletions
diff --git a/sci-biology/pufferfish/pufferfish-1.4.0.ebuild b/sci-biology/pufferfish/pufferfish-1.4.0.ebuild
deleted file mode 100644
index 588970e06..000000000
--- a/sci-biology/pufferfish/pufferfish-1.4.0.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit cmake
-
-SC_COMMIT="b1de7919c0a4d0e65c5cd0b6d78963516e44be25"
-SL_COMMIT="340dad36dff67ca96815bd412fe65587d4d64479"
-HL_COMMIT="be22a2a1082f6e570718439b9ace2db17a609eae"
-
-DESCRIPTION="Index for the colored, compacted, de Bruijn graph"
-HOMEPAGE="https://github.com/COMBINE-lab/pufferfish"
-SRC_URI="https://github.com/COMBINE-lab/pufferfish/archive/salmon-v${PV}.tar.gz -> ${P}.tar.gz
- https://github.com/martin-steinegger/setcover/archive/${SC_COMMIT}.tar.gz -> setcover-${P}.tar.gz
- https://github.com/COMBINE-lab/SeqLib/archive/${SL_COMMIT}.tar.gz -> seqlib-${P}.tar.gz
- https://github.com/samtools/htslib/archive/${HL_COMMIT}.tar.gz -> htslib-${P}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS=""
-
-DEPEND="dev-cpp/tbb"
-
-S="${WORKDIR}/${PN}-salmon-v${PV}"
-
-PATCHES=( "${FILESDIR}/${PN}-do-not-fetch.patch" )
-
-src_prepare() {
- mkdir -p external/{setcover,seqlib}
- mv "../setcover-${SC_COMMIT}"/* external/setcover || die
- mv "../SeqLib-${SL_COMMIT}"/* external/seqlib || die
- mv "../htslib-${HL_COMMIT}"/* external/seqlib/htslib || die
- cmake_src_prepare
-}