diff options
Diffstat (limited to 'sci-biology/pufferfish/pufferfish-1.4.0.ebuild')
-rw-r--r-- | sci-biology/pufferfish/pufferfish-1.4.0.ebuild | 35 |
1 files changed, 0 insertions, 35 deletions
diff --git a/sci-biology/pufferfish/pufferfish-1.4.0.ebuild b/sci-biology/pufferfish/pufferfish-1.4.0.ebuild deleted file mode 100644 index 588970e06..000000000 --- a/sci-biology/pufferfish/pufferfish-1.4.0.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit cmake - -SC_COMMIT="b1de7919c0a4d0e65c5cd0b6d78963516e44be25" -SL_COMMIT="340dad36dff67ca96815bd412fe65587d4d64479" -HL_COMMIT="be22a2a1082f6e570718439b9ace2db17a609eae" - -DESCRIPTION="Index for the colored, compacted, de Bruijn graph" -HOMEPAGE="https://github.com/COMBINE-lab/pufferfish" -SRC_URI="https://github.com/COMBINE-lab/pufferfish/archive/salmon-v${PV}.tar.gz -> ${P}.tar.gz - https://github.com/martin-steinegger/setcover/archive/${SC_COMMIT}.tar.gz -> setcover-${P}.tar.gz - https://github.com/COMBINE-lab/SeqLib/archive/${SL_COMMIT}.tar.gz -> seqlib-${P}.tar.gz - https://github.com/samtools/htslib/archive/${HL_COMMIT}.tar.gz -> htslib-${P}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" - -DEPEND="dev-cpp/tbb" - -S="${WORKDIR}/${PN}-salmon-v${PV}" - -PATCHES=( "${FILESDIR}/${PN}-do-not-fetch.patch" ) - -src_prepare() { - mkdir -p external/{setcover,seqlib} - mv "../setcover-${SC_COMMIT}"/* external/setcover || die - mv "../SeqLib-${SL_COMMIT}"/* external/seqlib || die - mv "../htslib-${HL_COMMIT}"/* external/seqlib/htslib || die - cmake_src_prepare -} |