aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
Diffstat (limited to 'sci-biology/quast/quast-2.3.ebuild')
-rw-r--r--sci-biology/quast/quast-2.3.ebuild39
1 files changed, 39 insertions, 0 deletions
diff --git a/sci-biology/quast/quast-2.3.ebuild b/sci-biology/quast/quast-2.3.ebuild
new file mode 100644
index 000000000..3cf92e32d
--- /dev/null
+++ b/sci-biology/quast/quast-2.3.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit python-r1
+
+DESCRIPTION="Compare quality of multiple genome assemblies to each other"
+HOMEPAGE="http://bioinf.spbau.ru/QUAST"
+SRC_URI="http://sourceforge.net/projects/quast/files/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ sci-biology/mummer
+ sci-biology/glimmerhmm"
+# sci-biology/GAGE
+# sci-biology/GeneMarkS
+# sci-biology/MetaGeneMark"
+
+# the above packages need to be created first
+
+RDEPEND="${DEPEND}"
+
+src_install(){
+ python_foreach_impl python_newscript quast.py quast
+ python_foreach_impl python_newscript metaquast.py metaquast
+
+ dodoc manual.html CHANGES
+
+ # TODO: install lib/ subdirectory contents into some PATH and PYTHON_PATH
+}