diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/act-bin/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/act-bin/act-bin-13.0.0.ebuild | 50 | ||||
| -rw-r--r-- | sci-biology/act-bin/metadata.xml | 12 |
3 files changed, 66 insertions, 0 deletions
diff --git a/sci-biology/act-bin/Manifest b/sci-biology/act-bin/Manifest new file mode 100644 index 000000000..0ca1980c8 --- /dev/null +++ b/sci-biology/act-bin/Manifest @@ -0,0 +1,4 @@ +DIST act-bin-13.0.0.html_build.zip 2067725 SHA256 6a07ff70aef13e633884491c83832c150532eb0f199c0c382bab8dd4d23c3f4d SHA512 c119b12a68e52249f3a417c503129b8e538baae218cda07cd4d52b34eab9be7cdbfc86180c6675f26afe8bac556e18b66a94407f00a133c58a2e1c626f6d3571 WHIRLPOOL ca4b5367aabf22e56d394d18d0546d132400fb6d28a9433b9524f89ef181acc06406b7230563444b5a2df8dd08ea4ee740c9b94d928c6830d3e5736723071c41 +DIST act-bin-13.0.0.manual.pdf 946922 SHA256 460adb7a9c5cd6f6e5b0bf499ddec48fddf0c475824c363db9ae8e6e7b1f0ade SHA512 6af8bf6fb9cf762c078288a09cae053c9c08f5d44dd8d7324acaaa73b63d79e107a403c5dbef48a319408e0158d3ace146f6ed29d55cb553e668be711ae73914 WHIRLPOOL 01cbd2cc1139d732f61ea21782dc13935369746c1eee3b83babf07fc47f76425c00297af6c253fddbb9c4d3d16ff3ce9a03a7596dde1419f4128e30b128ec176 +DIST act_v13.jar 11005084 SHA256 5aa943b851a596d7ef9354c495d7fd7b86e05a942bab6f5db4a459fa7a580a19 SHA512 693e55d2c1f71e99f981114aa9715dac7386bedaf6bd753b49ea58f1a4ef30b5f603384cf7c5b43d3c95eebc71dc66eba04e51b0303a80566c0a8d186f473d4d WHIRLPOOL dbbaea5b3c239ceb342ad8b6cf41bdbf995abb58c5cbf28ee4330271ebcd7dc05a336f3154f88e7b0fc3b7aeab5e4a8229eb7628dfa04245b9883e08903ea1ec +DIST sact_v13.jar 11533674 SHA256 c20b4bc0cafbd4d7aa577009c4ea89a78405230ab44b20aac01c715b03ecd8f6 SHA512 365c82933ebd4c20448a6872c4b3a5ddee313aa137bc83bf8b95a677fa7bcf32920be185971c00116d6e524357975ef633fe25496d124b6001eecdc698afcfaf WHIRLPOOL 22e576045369e251aa93a2da9081c841eaf11cc2f7804a354651ff9f40d4d36d3fed3662bd7596d3b5c633dab0ef688cecaae1bedd049d2dc97fd43f776eaeb0 diff --git a/sci-biology/act-bin/act-bin-13.0.0.ebuild b/sci-biology/act-bin/act-bin-13.0.0.ebuild new file mode 100644 index 000000000..debf770c0 --- /dev/null +++ b/sci-biology/act-bin/act-bin-13.0.0.ebuild @@ -0,0 +1,50 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit java-pkg-2 + +DESCRIPTION="DNA contig sequence comparison tool supplementing Artemis" +HOMEPAGE="http://www.sanger.ac.uk/science/tools/artemis-comparison-tool-act" +SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/sact_v13.jar + ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_v13.jar + ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_manual_complete.pdf -> ${P}.manual.pdf + ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_html_build.zip -> ${P}.html_build.zip" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + !sci-biology/artemis" +RDEPEND="${DEPEND} + >=virtual/jre-1.6:*" + +S="${WORKDIR}" + +src_unpack(){ + unzip "${DISTDIR}"/${P}.html_build.zip || die +} + +src_prepare(){ + default + cd act_html_build || die + rm -f .DS_Store HTML.index HTML.manifest || die +} + +src_install(){ + java-pkg_dojar "${DISTDIR}"/*.jar + dodoc "${DISTDIR}"/${P}.manual.pdf + insinto /usr/share/doc/"${PN}"/html + doins act_html_build/* +} + +pkg_postinst(){ + einfo "For BAM file support please install sci-biology/BamView" + einfo "You may find interesting the additional web resources:" + einfo "http://www.webact.org/WebACT" + einfo "http://www.hpa-bioinfotools.org.uk/pise/double_act.html" +} diff --git a/sci-biology/act-bin/metadata.xml b/sci-biology/act-bin/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/act-bin/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |