diff options
Diffstat (limited to 'sci-chemistry/ccpn/ccpn-2.1.2_p1.ebuild')
| -rw-r--r-- | sci-chemistry/ccpn/ccpn-2.1.2_p1.ebuild | 167 |
1 files changed, 167 insertions, 0 deletions
diff --git a/sci-chemistry/ccpn/ccpn-2.1.2_p1.ebuild b/sci-chemistry/ccpn/ccpn-2.1.2_p1.ebuild new file mode 100644 index 000000000..6e6ed0408 --- /dev/null +++ b/sci-chemistry/ccpn/ccpn-2.1.2_p1.ebuild @@ -0,0 +1,167 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +NEED_PYTHON=2.5 +PYTHON_MODNAME="${PN}" +PYTHON_USE_WITH="ssl tk" +PATCHSET="" +EAPI="2" + +inherit distutils portability python toolchain-funcs versionator + +MY_PN="${PN}mr" + +DESCRIPTION="The Collaborative Computing Project for NMR" +SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${PV/p/}.tar.gz" +[[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentooexperimental.org/~jlec/distfiles/update-${PATCHSET}.patch.bz2" +HOMEPAGE="http://www.ccpn.ac.uk/ccpn" + +SLOT="0" +LICENSE="|| ( CCPN LGPL-2.1 )" +KEYWORDS="~amd64 ~x86" +IUSE="doc +opengl" + +RDEPEND=" + dev-lang/tk + dev-python/elementtree + dev-python/numpy + dev-tcltk/tix + virtual/glut" +DEPEND="${RDEPEND}" +RESTRICT="mirror" + +S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV}) + +pkg_setup() { + python_version +} + +src_prepare() { + [[ -n ${PATCHSET} ]] && \ + epatch "${WORKDIR}"/update-${PATCHSET}.patch + + local tk_ver + local myconf + + tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)" + + if use opengl; then + if has_version media-libs/freeglut; then + GLUT_NEED_INIT="-DNEED_GLUT_INIT" + else + GLUT_NEED_INIT="" + fi + + IGNORE_GL_FLAG="" + GL_FLAG="-DUSE_GL_FALSE" + GL_DIR="/usr" + GL_LIB="-lglut -lGLU -lGL" + GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include" + GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)" + + else + IGNORE_GL_FLAG="-DIGNORE_GL" + GL_FLAG="-DUSE_GL_FALSE" + fi + GLUT_NOT_IN_GL="" + GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)" + + sed \ + -e "s:^\(CC = \).*:\1$(tc-getCC):g" \ + -e "s:^\(OPT_FLAG = \).*:\1${CFLAGS}:g" \ + -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \ + -e "s:^\(IGNORE_GL_FLAG = \).*:\1${IGNORE_GL_FLAG}:g" \ + -e "s:^\(GL_FLAG = \).*:\1${GL_FLAG}:g" \ + -e "s:^\(GLUT_NEED_INIT = \).*:\1${GLUT_NEED_INIT}:g" \ + -e "s:^\(GLUT_NOT_IN_GL = \).*:\1:g" \ + -e "s:^\(X11_LIB_FLAGS = \).*:\1-L/usr/$(get_libdir):g" \ + -e "s:^\(TCL_LIB_FLAGS = \).*:\1-L/usr/$(get_libdir):g" \ + -e "s:^\(TK_LIB_FLAGS = \).*:\1-L/usr/$(get_libdir):g" \ + -e "s:^\(PYTHON_INCLUDE_FLAGS = \).*:\1-I\$(PYTHON_DIR)/include/python${PYVER}:g" \ + -e "s:^\(GL_LIB_FLAGS = \).*:\1-L/usr/$(get_libdir):g" \ + c/environment_default.txt > c/environment.txt +} + +src_compile() { + emake \ + -C c \ + all links || \ + die "failed to compile" +} + +src_install() { + + local in_path + local gentoo_sitedir + local libdir + local files + local tkver + + in_path=$(python_get_sitedir)/${PN} + gentoo_sitedir=$(python_get_sitedir) + libdir=$(get_libdir) + tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2) + + for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do + sed -e "s:gentoo_sitedir:${gentoo_sitedir}:g" \ + -e "s:libdir:${libdir}:g" \ + -e "s:tkver:${tkver}:g" \ + "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}" + dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}" + done + + use doc && treecopy $(find . -name doc) "${D}"usr/share/doc/${PF}/html/ + + ebegin "Removing unneeded docs" + find . -name doc -exec rm -rf '{}' \; 2> /dev/null + eend + + for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do + sed \ + -e 's:#from __future__:from __future__:g' \ + -i ${i} + done + + insinto ${in_path} + + ebegin "Installing main files" + doins -r data model python || die "main files installation failed" + eend + + einfo "Adjusting permissions" + + files="ccpnmr/c/ContourFile.so + ccpnmr/c/ContourLevels.so + ccpnmr/c/ContourStyle.so + ccpnmr/c/PeakList.so + ccpnmr/c/SliceFile.so + ccpnmr/c/WinPeakList.so + ccpnmr/c/AtomCoordList.so + ccpnmr/c/AtomCoord.so + ccpnmr/c/Bacus.so + ccpnmr/c/CloudUtil.so + ccpnmr/c/DistConstraintList.so + ccpnmr/c/DistConstraint.so + ccpnmr/c/DistForce.so + ccpnmr/c/Dynamics.so + ccpnmr/c/Midge.so + ccp/c/StructAtom.so + ccp/c/StructBond.so + ccp/c/StructStructure.so + ccp/c/StructUtil.so + memops/c/BlockFile.so + memops/c/FitMethod.so + memops/c/GlHandler.so + memops/c/MemCache.so + memops/c/PdfHandler.so + memops/c/PsHandler.so + memops/c/ShapeFile.so + memops/c/StoreFile.so + memops/c/StoreHandler.so + memops/c/TkHandler.so" + + for FILE in ${files}; do + fperms 755 ${in_path}/python/${FILE} + done +} |