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Diffstat (limited to 'sci-chemistry/nmrpipe/nmrpipe-5.0.2009.203.18.54.ebuild')
| -rw-r--r-- | sci-chemistry/nmrpipe/nmrpipe-5.0.2009.203.18.54.ebuild | 132 |
1 files changed, 132 insertions, 0 deletions
diff --git a/sci-chemistry/nmrpipe/nmrpipe-5.0.2009.203.18.54.ebuild b/sci-chemistry/nmrpipe/nmrpipe-5.0.2009.203.18.54.ebuild new file mode 100644 index 000000000..516a3cdc9 --- /dev/null +++ b/sci-chemistry/nmrpipe/nmrpipe-5.0.2009.203.18.54.ebuild @@ -0,0 +1,132 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +DESCRIPTION="Spectral visualisation, analysis and Fourier processing" +# The specific terms of this license are printed automatically on startup +# by some NMRPipe applications. The user also has to accept them before +# downloading the package. +LICENSE="as-is" +HOMEPAGE="http://spin.niddk.nih.gov/bax/software/NMRPipe/" +# The NMRPipe installation script which we are not allowed to modify +# requires all the following to be present for a complete installation. +# Many of the bundled applications and libraries are afterwards deleted +# (by this ebuild). The Gentoo provided applications and libraries are +# used instead. The notable exception is the Tcl/Tk libraries; NMRPipe +# requires a modified version of these. Unfortunately, this requires to +# redefine the location of the libraries, which is done by sourcing an +# initialisation script. NMRPipe users are used to this, and this ebuild +# also prints a notice to this effect. +SRC_URI="NMRPipeX.tZ + valpha_all.tar + talos.tZ + dyn.tZ + acme.tar.Z + binval.com + install.com" + +SLOT="0" +IUSE="" +# Right now, precompiled executables are only available for Linux on the +# x86 architecture. The maintainer chose to keep the sources closed, but +# says he will gladly provide precompiled executables for other platforms +# if there are such requests. +KEYWORDS="-* ~x86" + +# The maintainer absolutely wants to control redistribution. +RESTRICT="fetch" + +DEPEND="app-shells/tcsh" + +RDEPEND="${DEPEND} + dev-lang/tk + dev-tcltk/blt + sys-libs/libtermcap-compat + sys-libs/ncurses + x11-libs/xview + x11-libs/libX11 + app-editors/nedit" + +S="${WORKDIR}" +NMRBASE="/opt/${PN}" + +pkg_nofetch() { + einfo "Please visit:" + einfo "\t${HOMEPAGE}" + einfo + einfo "Contact the package maintainer, then download the following files:" + for i in ${A}; do + einfo "\t${i}" + done + einfo + einfo "Place the downloaded files in your distfiles directory:" + einfo "\t${DISTDIR}" + echo +} + +src_unpack() { + # The installation script will unpack the package. We just provide symlinks + # to the archive files, ... + for i in valpha_all.tar talos.tZ NMRPipeX.tZ dyn.tZ acme.tar.Z; do + ln -s "${DISTDIR}"/${i} ${i} + done + # ... copy the installation scripts ... + cp "${DISTDIR}"/{binval.com,install.com} . + # ... and make the installation scripts executable. + chmod +x binval.com install.com +} + +src_install() { + # Unset DISPLAY to avoid the interactive graphical test. + DISPLAY="" ./install.com +type linux9 +dest "${S}"/NMR || die + + # Remove the symlinks for the archives and the installation scripts. + for i in ${A}; do + rm ${i} || die "Failed to remove archive symlinks." + done + # Remove some of the bundled applications and libraries; they are + # provided by Gentoo instead. +# rm -r nmrbin.linux9/{lib/{libBLT24.so,libolgx.so*,libxview.so*,*.timestamp},*timestamp,xv,gnuplot*,rasmol*,nc,nedit} \ + rm -r nmrbin.linux9/{lib/{libolgx.so*,libxview.so*,*.timestamp},*timestamp,xv,gnuplot*,rasmol*,nc,nedit} \ + nmrbin.{linux,mac,sgi6x,sol,winxp} nmruser format \ + || die "Failed to remove unnecessary libraries." + # Remove the initialisation script generated during the installation. + # It contains incorrect hardcoded paths; only the "nmrInit.com" script + # should be used. + rm com/nmrInit.linux9.com || die "Failed to remove broken init script." + # Remove installation log files. + rm README_NMRPIPE_USERS *.log || die "Failed to remove installation log." + # Remove unused binaries + rm talos/bin/TALOS.{linux,mac,sgi6x,winxp} pdb/misc/addSeg || die + + # Set the correct path to NMRPipe in the auxiliary scripts. + for i in $(find com/ dynamo/surface/misc/ nmrtxt/ talos/misc -type f); do + sed -e "s%/u/delaglio%${NMRBASE}%" -i ${i} || die \ + "Failed patching scripts." + done + sed -i "s:${WORKDIR}:${NMRBASE}:g" com/font.com + + newenvd "${FILESDIR}"/env-${PN}-new 40${PN} || die "Failed to install env file." + insinto ${NMRBASE} +# Which brainiack wrote this!? +# insopts -m0755 + doins -r * || die "Failed to install application." + dosym nmrbin.linux9 ${NMRBASE}/bin || die \ + "Failed to symlink binaries." + fperms 775 ${NMRBASE}/{talos/bin,nmrbin.linux9,com,dynamo/tcl}/* +} + +pkg_postinst() { + echo + ewarn "Before using NMRPipe applications, users must source the following" + ewarn "csh script, which will set the necessary environment variables:" + ewarn "\t${NMRBASE}/com/nmrInit.com" + ewarn + ewarn "Be aware that this script redefines the locations of the Tcl" + ewarn "libraries. This could break other non-NMRPipe Tcl applications" + ewarn "run in the same session." + ewarn + ewarn "Using Dynamo does not require running an additional initialisation" + ewarn "script. The necessary environment variables should already be set." + echo +} |