diff options
Diffstat (limited to 'sci-libs/itk/itk-5.2.1-r2.ebuild')
| -rw-r--r-- | sci-libs/itk/itk-5.2.1-r2.ebuild | 250 |
1 files changed, 250 insertions, 0 deletions
diff --git a/sci-libs/itk/itk-5.2.1-r2.ebuild b/sci-libs/itk/itk-5.2.1-r2.ebuild new file mode 100644 index 000000000..0b1f25860 --- /dev/null +++ b/sci-libs/itk/itk-5.2.1-r2.ebuild @@ -0,0 +1,250 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{10..11} ) +VIRTUALX_REQUIRED="manual" + +inherit cmake python-single-r1 virtualx + +MY_PN="InsightToolkit" +MY_P="${MY_PN}-${PV}" +GLI_HASH="89da9305f5750d3990ca9fd35ecc5ce0b39c71a6" +IAD_HASH="24825c8d246e941334f47968553f0ae388851f0c" +TEST_HASH="7ab9d41ad5b42ccbe8adcaf0b24416d439a264d0" +declare -a GLI_TEST_HASHES=( + "a5e11ea71164ff78c65fcf259db01ea5db981a9d868e60045ff2bffca92984df1174bf984a1076e450f0d5d69b4f0191ed1a61465c220e2c91a893b5df150c0a" + "bcdbb347f3704262d1f00be7179d6a0a6e68aed56c0653e8072ee5a94985c713bd229c935b1226a658af84fb7f1fffc2458c98364fc35303a2303b12f9f7ce2f" +) + +GLI_TEST_SRC="" +for i in "${GLI_TEST_HASHES[@]}"; do + GLI_TEST_SRC+="https://data.kitware.com/api/v1/file/hashsum/sha512/${i}/download -> ${PN}-test-${i} " +done + +DESCRIPTION="NLM Insight Segmentation and Registration Toolkit" +HOMEPAGE="https://itk.org" +SRC_URI=" + https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/${MY_P}.tar.gz + https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator/archive/${GLI_HASH}.tar.gz -> ITKGenericLabelInterpolator-${PV}.tar.gz + https://github.com/ntustison/ITKAdaptiveDenoising/archive/${IAD_HASH}.tar.gz -> ITKAdaptiveDenoising-${PV}.tar.gz + test? ( + https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/InsightData-${PV}.tar.gz + https://github.com/InsightSoftwareConsortium/ITKTestingData/archive/${TEST_HASH}.tar.gz -> ${P}-testingdata.tar.gz + ${GLI_TEST_SRC} + ) + " + +LICENSE="Apache-2.0" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="debug doc examples fftw itkv4-compat python review test vtkglue" +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +RESTRICT="!test? ( test )" + +RDEPEND=" + dev-cpp/eigen:3 + dev-libs/double-conversion:0= + dev-libs/expat:0= + media-libs/openjpeg:2 + media-libs/libpng:0= + media-libs/tiff:0=[jpeg] + sci-libs/dcmtk:0= + sci-libs/hdf5:0=[cxx] + sci-libs/gdcm:0= + sys-libs/zlib:0= + media-libs/libjpeg-turbo:0= + fftw? ( sci-libs/fftw:3.0= ) + vtkglue? ( + sci-libs/vtk:0=[rendering] + python? ( + sci-libs/vtk:0=[python,${PYTHON_SINGLE_USEDEP}] + ) + ) + python? ( ${PYTHON_DEPS} ) +" +DEPEND="${RDEPEND} + sys-apps/coreutils + python? ( + >=dev-lang/swig-2.0:0 + dev-libs/castxml + ) + doc? ( app-text/doxygen ) +" +BDEPEND=" + test? ( + vtkglue? ( ${VIRTUALX_DEPEND} ) + python? ( + $(python_gen_cond_dep 'dev-python/numpy[${PYTHON_USEDEP}]') + ) + ) +" + +S="${WORKDIR}/${MY_P}" + +PATCHES=( + "${FILESDIR}/${P}-upstream-fixes.patch" + "${FILESDIR}/${P}-system-tiff-has-64.patch" + "${FILESDIR}/${P}-fix-castxml-clang-attr-malloc.patch" + "${FILESDIR}/${P}-system-openjpeg.patch" +) + +pkg_pretend() { + if [[ -z ${ITK_COMPUTER_MEMORY_SIZE} ]]; then + elog "To tune ITK to make the best use of working memory you can set" + elog " ITK_COMPUTER_MEMORY_SIZE=XX" + elog "in make.conf, default is 1 (unit is GB)" + fi + if use python && [[ -z ${ITK_WRAP_DIMS} ]]; then + elog "For Python language bindings, you can define the dimensions" + elog "you want to create bindings for by setting" + elog " ITK_WRAP_DIMS=X;Y;Z..." + elog "in make.conf, default is 2;3 for 2D and 3D data" + fi +} + +src_prepare() { + # drop bundled libs + local -a DROPS=( + DoubleConversion/src/double-conversion + Eigen3/src/itkeigen + Expat/src/expat + GDCM/src/gdcm + JPEG/src/itkjpeg + HDF5/src/itkhdf5 + OpenJPEG/src/openjpeg + PNG/src/itkpng + TIFF/src/itktiff + ZLIB/src/itkzlib + ) + local x + for x in "${DROPS[@]}"; do + ebegin "Dropping bundled ${x%%/*}" + rm -r "Modules/ThirdParty/${x}" || die + eend $? + done + { + find Modules/ThirdParty -mindepth 2 -maxdepth 2 -type d -name src -printf '%P\n' + printf '%s\n' "${DROPS[@]}" | sed 's,/[^/]*$,,' + } | sort | uniq -u | xargs -n 1 ewarn "Using bundled" || die + + # Remote modules + ln -sr "../ITKGenericLabelInterpolator-${GLI_HASH}" Modules/External/ITKGenericLabelInterpolator || die + ln -sr "../ITKAdaptiveDenoising-${IAD_HASH}" Modules/External/ITKAdaptiveDenoising || die + + cmake_src_prepare + + if use test; then + cp -rf "../ITKTestingData-${TEST_HASH}/"* ".ExternalData/" || die + mv "../ITKTestingData-${TEST_HASH}" "${BUILD_DIR}/.ExternalData" || die + for i in "${GLI_TEST_HASHES[@]}"; do + cp "${DISTDIR}/${PN}-test-${i}" ".ExternalData/SHA512/${i}" || die + cp "${DISTDIR}/${PN}-test-${i}" "${BUILD_DIR}/.ExternalData/SHA512/${i}" || die + done + fi +} + +src_configure() { + local mycmakeargs=( + -DITK_BUILD_DOCUMENTATION="$(usex doc ON OFF)" + -DITK_INSTALL_DOC_DIR="share/doc/${P}" + -DBUILD_EXAMPLES="$(usex examples ON OFF)" + -DBUILD_SHARED_LIBS=ON + -DBUILD_TESTING="$(usex test ON OFF)" + -Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion" + -DExternalData_OBJECT_STORES="${WORKDIR}/InsightToolkit-${PV}/.ExternalData" + -DGDCM_USE_SYSTEM_OPENJPEG=ON + -DITK_FORBID_DOWNLOADS:BOOL=ON + -DITK_INSTALL_LIBRARY_DIR=$(get_libdir) + -DITK_USE_REVIEW="$(usex review ON OFF)" + -DITK_USE_SYSTEM_DCMTK=ON + -DITK_USE_SYSTEM_DOUBLECONVERSION=ON + -DITK_USE_SYSTEM_CASTXML=ON + -DITK_USE_SYSTEM_EIGEN=ON + -DITK_USE_SYSTEM_EXPAT=ON + -DITK_USE_SYSTEM_GDCM=ON + -DITK_USE_SYSTEM_HDF5=ON + -DITK_USE_SYSTEM_JPEG=ON + -DITK_USE_SYSTEM_OPENJPEG=ON + -DITK_USE_SYSTEM_PNG=ON + -DITK_USE_SYSTEM_SWIG=ON + -DITK_USE_SYSTEM_TIFF=ON + -DITK_USE_SYSTEM_ZLIB=ON + -DITK_USE_KWSTYLE=OFF + -DITK_BUILD_DEFAULT_MODULES=ON + -DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}" + -DModule_AdaptiveDenoising:BOOL=ON + -DModule_GenericLabelInterpolator:BOOL=ON + -DModule_ITKReview:BOOL=ON + -DWRAP_ITK_JAVA=OFF + -DWRAP_ITK_TCL=OFF + -DITKV4_COMPATIBILITY:BOOL=$(usex itkv4-compat) + ) + if use fftw; then + mycmakeargs+=( + -DUSE_FFTWD=ON + -DUSE_FFTWF=ON + -DUSE_SYSTEM_FFTW=ON + -DITK_WRAP_double=ON + -DITK_WRAP_vector_double=ON + -DITK_WRAP_covariant_vector_double=ON + -DITK_WRAP_complex_double=ON + ) + fi + if use vtkglue; then + mycmakeargs+=( + -DModule_ITKVtkGlue=ON + ) + fi + if use python; then + mycmakeargs+=( + -DITK_WRAP_PYTHON=ON + -DPython3_EXECUTABLE="${PYTHON}" + -DITK_WRAP_DIMS="${ITK_WRAP_DIMS:-2;3}" + ) + else + mycmakeargs+=( + -DITK_WRAP_PYTHON=OFF + ) + fi + cmake_src_configure +} + +src_install() { + cmake_src_install + + if use examples; then + docinto examples + docompress -x /usr/share/doc/${PF}/examples + dodoc -r "${S}"/Examples/* + fi + + echo "ITK_DATA_ROOT=${EPREFIX}/usr/share/${PN}/data" > ${T}/40${PN} || die + local ldpath="${EPREFIX}/usr/$(get_libdir)/InsightToolkit" + if use python; then + echo "PYTHONPATH=${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >> "${T}"/40${PN} || die + ldpath="${ldpath}:${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib" + fi + echo "LDPATH=${ldpath}" >> "${T}"/40${PN} || die + doenvd "${T}"/40${PN} + + if use doc; then + cd "${WORKDIR}"/html || die + rm *.md5 || die "Failed to remove superfluous hashes" + einfo "Installing API docs. This may take some time." + docinto api-docs + dodoc -r * + fi + + use python && python_optimize +} + +src_test() { + if use vtkglue; then + virtx cmake_src_test + else + cmake_src_test + fi +} |