diff options
Diffstat (limited to 'sci-libs/shogun')
| -rw-r--r-- | sci-libs/shogun/Manifest | 4 | ||||
| -rw-r--r-- | sci-libs/shogun/files/shogun-0.9.3-lapack.patch | 18 | ||||
| -rw-r--r-- | sci-libs/shogun/metadata.xml | 22 | ||||
| -rw-r--r-- | sci-libs/shogun/shogun-0.9.3.ebuild | 64 |
4 files changed, 0 insertions, 108 deletions
diff --git a/sci-libs/shogun/Manifest b/sci-libs/shogun/Manifest deleted file mode 100644 index a8c260cf2..000000000 --- a/sci-libs/shogun/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -AUX shogun-0.9.3-lapack.patch 583 RMD160 e1e70f045fa448601e8f43b6a7603030981dbf97 SHA1 abef54b23c9041ef65faa7e0324e89fed52749c4 SHA256 b86cbcb4f0003754393c6e55f501b0721d3479ee6bed48c876f1ee564b9a2825 -DIST shogun-0.9.3.tar.bz2 2853271 RMD160 9638a6b747a1177b048720b8999c60f33c7df5ef SHA1 d559dff3e11f777a23f00278d78d259ad896b829 SHA256 597d08155c7eff894dfae64dff8d4b37a5aba1da4a87b335881bddcb1a587526 -EBUILD shogun-0.9.3.ebuild 1625 RMD160 79dfc02d159c84b6cfcd749150779979e8273cdc SHA1 17df8f64dbe4270ead4158f54a6928fa05095a76 SHA256 42e0e74ebf89cff12b1c461264067ccf32350abd63899404add950aa8d290968 -MISC metadata.xml 1297 RMD160 dcc89a39c7d7a60ae5c128b8778cd314646e1417 SHA1 9ffe75693797b1eeb466223d6332cd589b32c624 SHA256 84677e9d55cab8bed4c8d99fdb917a6a31d21904526f20b95137716e6fed63e0 diff --git a/sci-libs/shogun/files/shogun-0.9.3-lapack.patch b/sci-libs/shogun/files/shogun-0.9.3-lapack.patch deleted file mode 100644 index 32e41aa1d..000000000 --- a/sci-libs/shogun/files/shogun-0.9.3-lapack.patch +++ /dev/null @@ -1,18 +0,0 @@ ---- src/configure.orig 2010-06-01 19:49:30.000000000 +0100 -+++ src/configure 2010-06-01 19:52:05.000000000 +0100 -@@ -2421,13 +2421,13 @@ - } - EOF - echocheck "AMD ACML support" -- if cc_check -lacml -lcblas -lgfortran -+ if cc_check $(pkg-config --libs cblas lapack) - then - echores "yes" - HAVE_ACML='#define HAVE_ACML 1' - HAVE_LAPACK='#define HAVE_LAPACK 1' - DEFINES="$DEFINES -DHAVE_ACML -DHAVE_LAPACK" -- LINKFLAGS="$LINKFLAGS -lacml -lcblas -lgfortran" -+ LINKFLAGS="$LINKFLAGS $(pkg-config --libs cblas lapack)" - else - echores "no" - diff --git a/sci-libs/shogun/metadata.xml b/sci-libs/shogun/metadata.xml deleted file mode 100644 index b5cdff054..000000000 --- a/sci-libs/shogun/metadata.xml +++ /dev/null @@ -1,22 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> -<herd>sci</herd> -<longdescription> - SHOGUN is a new machine learning toolbox with focus on large scale kernel - methods and especially on Support Vector Machines (SVM) with focus to - bioinformatics. It provides a generic SVM object interfacing to several - different SVM implementations. Each of the SVMs can be combined with a variety - of the many kernels implemented. It can deal with weighted linear combination - of a number of sub-kernels, each of which not necessarily working on the same - domain, where an optimal sub-kernel weighting can be learned using Multiple - Kernel Learning. Apart from SVM 2-class classification and regression - problems, a number of linear methods like Linear Discriminant Analysis (LDA), - Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to - train hidden markov models are implemented. The input feature-objects can be - dense, sparse or strings and of type int/short/double/char and can be - converted into different feature types. Chains of preprocessors (e.g. - substracting the mean) can be attached to each feature object allowing for - on-the-fly pre-processing. -</longdescription> -</pkgmetadata> diff --git a/sci-libs/shogun/shogun-0.9.3.ebuild b/sci-libs/shogun/shogun-0.9.3.ebuild deleted file mode 100644 index 321959d93..000000000 --- a/sci-libs/shogun/shogun-0.9.3.ebuild +++ /dev/null @@ -1,64 +0,0 @@ -# Copyright 1999-2010 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI=2 - -inherit eutils toolchain-funcs - -DESCRIPTION="Large Scale Machine Learning Toolbox" -HOMEPAGE="http://www.shogun-toolbox.org/" -SRC_URI="http://shogun-toolbox.org/archives/shogun/releases/${PV:0:3}/sources/${P}.tar.bz2" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -IUSE="boost bz2 cplex doc glpk gzip hdf5 lapack lpsolve lzma lzo octave python R readline threads" - -RDEPEND="virtual/lapack - bzip2? ( app-arch/bzip2 ) - cplex? ( sci-mathematics/cplex-bin ) - glpk? ( sci-mathematics/glpk ) - gzip? ( app-arch/gzip ) - hdf5? ( sci-libs/hdf5 ) - glpk? ( sci-mathematics/lpsolve ) - lzma? ( app-arch/xz-utils ) - lzo? ( dev-libs/lzo ) - octave? ( sci-mathematics/octave ) - python? ( dev-python/numpy ) - R? ( dev-lang/R ) - readline? ( sys-libs/readline )" - -DEPEND="${RDEPEND} - dev-libs/boost - dev-util/pkgconfig - doc? ( app-doc/doxygen )" - -S="${WORKDIR}/${P}/src" - -src_configure() { - # not an autotools configure (based on mplayer one) - # disable svmlight based on debian comment - ./configure \ - --cc=$(tc-getCC) \ - --cxx=$(tc-getCXX) \ - --prefix=/usr \ - --datadir=/usr/share/${PN} \ - --mandir=/usr/share/man \ - --confdir=/etc \ - --libdir=/usr/$(get_libdir) \ - --disable-cpudetection \ - --disable-svm-light \ - $(use_enable doc doxygen) \ - $(use_enable boost boost-serialization) \ - $(use_enable glpk) \ - $(use_enable hdf5) \ - $(use_enable lapack) \ - $(use_enable readline) \ - $(use_enable threads hmm-parallel) -} - -src_install() { - emake DESTDIR="${D}" install || die "emake install failed" -} |