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-rw-r--r--sci-libs/shogun/Manifest4
-rw-r--r--sci-libs/shogun/files/shogun-0.9.3-lapack.patch18
-rw-r--r--sci-libs/shogun/metadata.xml22
-rw-r--r--sci-libs/shogun/shogun-0.9.3.ebuild64
4 files changed, 0 insertions, 108 deletions
diff --git a/sci-libs/shogun/Manifest b/sci-libs/shogun/Manifest
deleted file mode 100644
index a8c260cf2..000000000
--- a/sci-libs/shogun/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-AUX shogun-0.9.3-lapack.patch 583 RMD160 e1e70f045fa448601e8f43b6a7603030981dbf97 SHA1 abef54b23c9041ef65faa7e0324e89fed52749c4 SHA256 b86cbcb4f0003754393c6e55f501b0721d3479ee6bed48c876f1ee564b9a2825
-DIST shogun-0.9.3.tar.bz2 2853271 RMD160 9638a6b747a1177b048720b8999c60f33c7df5ef SHA1 d559dff3e11f777a23f00278d78d259ad896b829 SHA256 597d08155c7eff894dfae64dff8d4b37a5aba1da4a87b335881bddcb1a587526
-EBUILD shogun-0.9.3.ebuild 1625 RMD160 79dfc02d159c84b6cfcd749150779979e8273cdc SHA1 17df8f64dbe4270ead4158f54a6928fa05095a76 SHA256 42e0e74ebf89cff12b1c461264067ccf32350abd63899404add950aa8d290968
-MISC metadata.xml 1297 RMD160 dcc89a39c7d7a60ae5c128b8778cd314646e1417 SHA1 9ffe75693797b1eeb466223d6332cd589b32c624 SHA256 84677e9d55cab8bed4c8d99fdb917a6a31d21904526f20b95137716e6fed63e0
diff --git a/sci-libs/shogun/files/shogun-0.9.3-lapack.patch b/sci-libs/shogun/files/shogun-0.9.3-lapack.patch
deleted file mode 100644
index 32e41aa1d..000000000
--- a/sci-libs/shogun/files/shogun-0.9.3-lapack.patch
+++ /dev/null
@@ -1,18 +0,0 @@
---- src/configure.orig 2010-06-01 19:49:30.000000000 +0100
-+++ src/configure 2010-06-01 19:52:05.000000000 +0100
-@@ -2421,13 +2421,13 @@
- }
- EOF
- echocheck "AMD ACML support"
-- if cc_check -lacml -lcblas -lgfortran
-+ if cc_check $(pkg-config --libs cblas lapack)
- then
- echores "yes"
- HAVE_ACML='#define HAVE_ACML 1'
- HAVE_LAPACK='#define HAVE_LAPACK 1'
- DEFINES="$DEFINES -DHAVE_ACML -DHAVE_LAPACK"
-- LINKFLAGS="$LINKFLAGS -lacml -lcblas -lgfortran"
-+ LINKFLAGS="$LINKFLAGS $(pkg-config --libs cblas lapack)"
- else
- echores "no"
-
diff --git a/sci-libs/shogun/metadata.xml b/sci-libs/shogun/metadata.xml
deleted file mode 100644
index b5cdff054..000000000
--- a/sci-libs/shogun/metadata.xml
+++ /dev/null
@@ -1,22 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription>
- SHOGUN is a new machine learning toolbox with focus on large scale kernel
- methods and especially on Support Vector Machines (SVM) with focus to
- bioinformatics. It provides a generic SVM object interfacing to several
- different SVM implementations. Each of the SVMs can be combined with a variety
- of the many kernels implemented. It can deal with weighted linear combination
- of a number of sub-kernels, each of which not necessarily working on the same
- domain, where an optimal sub-kernel weighting can be learned using Multiple
- Kernel Learning. Apart from SVM 2-class classification and regression
- problems, a number of linear methods like Linear Discriminant Analysis (LDA),
- Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to
- train hidden markov models are implemented. The input feature-objects can be
- dense, sparse or strings and of type int/short/double/char and can be
- converted into different feature types. Chains of preprocessors (e.g.
- substracting the mean) can be attached to each feature object allowing for
- on-the-fly pre-processing.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-libs/shogun/shogun-0.9.3.ebuild b/sci-libs/shogun/shogun-0.9.3.ebuild
deleted file mode 100644
index 321959d93..000000000
--- a/sci-libs/shogun/shogun-0.9.3.ebuild
+++ /dev/null
@@ -1,64 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=2
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="Large Scale Machine Learning Toolbox"
-HOMEPAGE="http://www.shogun-toolbox.org/"
-SRC_URI="http://shogun-toolbox.org/archives/shogun/releases/${PV:0:3}/sources/${P}.tar.bz2"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-IUSE="boost bz2 cplex doc glpk gzip hdf5 lapack lpsolve lzma lzo octave python R readline threads"
-
-RDEPEND="virtual/lapack
- bzip2? ( app-arch/bzip2 )
- cplex? ( sci-mathematics/cplex-bin )
- glpk? ( sci-mathematics/glpk )
- gzip? ( app-arch/gzip )
- hdf5? ( sci-libs/hdf5 )
- glpk? ( sci-mathematics/lpsolve )
- lzma? ( app-arch/xz-utils )
- lzo? ( dev-libs/lzo )
- octave? ( sci-mathematics/octave )
- python? ( dev-python/numpy )
- R? ( dev-lang/R )
- readline? ( sys-libs/readline )"
-
-DEPEND="${RDEPEND}
- dev-libs/boost
- dev-util/pkgconfig
- doc? ( app-doc/doxygen )"
-
-S="${WORKDIR}/${P}/src"
-
-src_configure() {
- # not an autotools configure (based on mplayer one)
- # disable svmlight based on debian comment
- ./configure \
- --cc=$(tc-getCC) \
- --cxx=$(tc-getCXX) \
- --prefix=/usr \
- --datadir=/usr/share/${PN} \
- --mandir=/usr/share/man \
- --confdir=/etc \
- --libdir=/usr/$(get_libdir) \
- --disable-cpudetection \
- --disable-svm-light \
- $(use_enable doc doxygen) \
- $(use_enable boost boost-serialization) \
- $(use_enable glpk) \
- $(use_enable hdf5) \
- $(use_enable lapack) \
- $(use_enable readline) \
- $(use_enable threads hmm-parallel)
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "emake install failed"
-}