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-rw-r--r--sys-cluster/empi/empi-0.10.ebuild31
-rw-r--r--sys-cluster/empi/files/ChangeLog-0.10121
-rw-r--r--sys-cluster/empi/files/README.txt76
-rw-r--r--sys-cluster/empi/files/empi-0.10497
-rw-r--r--sys-cluster/empi/files/eselect.mpi-0.10273
-rw-r--r--sys-cluster/empi/files/mpi.csh3
-rw-r--r--sys-cluster/empi/files/mpi.sh3
-rw-r--r--sys-cluster/empi/metadata.xml11
8 files changed, 0 insertions, 1015 deletions
diff --git a/sys-cluster/empi/empi-0.10.ebuild b/sys-cluster/empi/empi-0.10.ebuild
deleted file mode 100644
index 5f24f1107..000000000
--- a/sys-cluster/empi/empi-0.10.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils
-
-DESCRIPTION="Handling Multiple MPI Implementations"
-HOMEPAGE="http://dev.gentoo.org/~jsbronder/empi.xml"
-SRC_URI=""
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-DEPEND="app-admin/eselect"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"
-
-src_install() {
- newbin "${FILESDIR}"/${P} ${PN}
- dodoc "${FILESDIR}"/README.txt
- dodoc "${FILESDIR}"/ChangeLog-${PV}
-
- insinto /usr/share/eselect/modules
- newins "${FILESDIR}"/eselect.mpi-${PV} mpi.eselect
- exeinto /etc/profile.d
- doexe "${FILESDIR}"/mpi.sh
- doexe "${FILESDIR}"/mpi.csh
-}
diff --git a/sys-cluster/empi/files/ChangeLog-0.10 b/sys-cluster/empi/files/ChangeLog-0.10
deleted file mode 100644
index ac5eff065..000000000
--- a/sys-cluster/empi/files/ChangeLog-0.10
+++ /dev/null
@@ -1,121 +0,0 @@
-commit ab2dc2e2210f81d24b42180359d0842eb33f994a (HEAD, tag: v0.10, origin/master, origin/HEAD, master)
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Wed Jul 10 20:22:13 2013 -0400
-
- empi-0.10
-
-commit d84c6ce3949f9eeeb1bab816e3e25eef0dd75661
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Tue Jul 9 18:48:01 2013 -0400
-
- empi: support make.conf move
-
- Later versions of portage moved /etc/make.conf to /etc/portage/make.conf
- by default while still supporting the old location.
-
-commit 914c277799fd0f44266864fa16fef338046be5f6
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Tue Jul 9 18:12:50 2013 -0400
-
- eclass: add sys-cluster/mpich
-
- upstream renamed mpich2 to mpich.
-
-commit 5c80290f4f0d90fe84fa0f18f2264052c544c008
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Mon Jul 1 22:16:04 2013 -0400
-
- Revert "eclass: workaround OpenMPI build issue #462602"
-
- This reverts commit 5e9b1be531ca02607e730a5b43765850eae9a0c5.
-
-commit a5d63455bf53a1ca6ab0220e3f308707a852b0cc (tag: v0.9)
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Mon Jul 1 20:06:50 2013 -0400
-
- empi-0.9
-
-commit 4540a319542ddc7c0fbcea47174fe85e1810561c
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Mon Jul 1 20:05:35 2013 -0400
-
- empi: better filtering of emerge output
-
- Ignore extra information spit out by emerge, like news.
-
-commit 5e9b1be531ca02607e730a5b43765850eae9a0c5
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Mon Jul 1 20:04:58 2013 -0400
-
- eclass: workaround OpenMPI build issue #462602
-
- export FAKEROOTKEY=1 to stop OpenMPI from replacing malloc.
-
-commit a17e4452cb93014e2a4d5f7615e5d09f2df9c6a2 (tag: v0.8)
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Thu Feb 21 22:56:27 2013 -0500
-
- empi-0.8
-
-commit b38f48aa70933858d410abce58964e55708471c9
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Thu Feb 21 22:54:28 2013 -0500
-
- empi: manage overlay metadata
-
- Add overlay metadata management. Snagged from crossdev.
- http://git.overlays.gentoo.org/gitweb/?p=proj/crossdev.git
-
-commit 4305d879c232acd663a8bb13505e5cfa403c5df5
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Thu Feb 21 21:05:19 2013 -0500
-
- empi: provide and set overlay default
-
- Set default overlay path to /var/cache/overlays/mpi
-
-commit fd7eed35034cb54dbe0d8f553c57abceee3c0eea
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Thu Feb 21 20:40:36 2013 -0500
-
- empi: allow all users to see usage screen
-
-commit 84aa3a41dbbf2924dc223614c267ff6e79bfce2e
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Fri Jan 11 16:43:08 2013 -0500
-
- rename MPI_PORTDIR and pull it from the portage env
-
-commit 77318d28462f05b4a8a6f1ac7b270aa07b5ebc8a
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Fri Jan 11 16:07:14 2013 -0500
-
- rename global variables to be obvious
-
-commit 07beb4baf6af2a45bd382d6b7ba87d8bcbeda7a7
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Fri Jan 11 15:44:50 2013 -0500
-
- sanitize whitespace
-
-commit 7c7fb4f0669d554a5301e70a46ae82e584685aff
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Tue Mar 22 10:27:53 2011 -0400
-
- mpi.eclass: Improve handling of unclassed dep strings
-
- Instead of requiring a list of packages to block when calculating the
- dep list for an unclassed ebuild, simply inject a dep string. This
- will allow the use of USE-conditional blockers.
-
-commit 0319e9cac8325bda7440f0f48eeac30056658b7e
-Author: Nicolas Bigaouette <nbigaouette@gmail.com>
-Date: Wed Nov 24 22:42:49 2010 -0500
-
- Typo: 'classs' to 'classes'
-
-commit 7f0ce9ea97ee8f72dc275ebdf3ce7ab44ad6538a
-Author: Justin Bronder <jsbronder@gmail.com>
-Date: Mon Nov 29 11:51:31 2010 -0500
-
- Initial import to git.
diff --git a/sys-cluster/empi/files/README.txt b/sys-cluster/empi/files/README.txt
deleted file mode 100644
index 0148775fd..000000000
--- a/sys-cluster/empi/files/README.txt
+++ /dev/null
@@ -1,76 +0,0 @@
-= Introduction =
-Empi is basically a reworking of vapier's crossdev script to
-handle installing multiple mpi implementations and applications
-that depend on them. This is done through trickery involving
-adding categories that portage will recognize, moving mpi-enabled
-packages (defined as those using mpi.eclass) to a local overlay
-directory and then emerging these packages using the new
-category.
-
-Empi handles getting mpi application ebuilds into the overlay,
-copying anything in package.{use,keywords}, and wrapping the
-emerge process. The eclass handles putting the package files
-into separate "root" directories based on the category name as
-well as making sure the applications build against the
-appropriate environment.
-
-I also provide eselect-mpi, which unlike every other eselect
-module I've ever used, is designed to manage a users personal
-environment by writing to ${HOME}/.env.d/mpi. This provides a
-quick and easy way for users to experiment with various
-implementations while imposing on any other user's ability to
-use their preferred implementation.
-
-The newly written mpi.eclass should handle empi-based and standard
-emerging of packages in a manner that enables package maintainers
-to quickly port their applications without much knowledge of the
-underlying mechanics. At least, that was my intent, maybe I
-succeeded.
-
-
-= Definitions =
-Class: Fake category name used by empi. Must be
- prefixed with mpi-
-Base Implementation: Actual mpi-implementation package that will
- provide all mpi functionality to the above.
-
-
-= Instructions =
-
-The following creates a class called "mpi-openmpi"
-using sys-cluster/openmpi as the base implementation. We also
-set some USE flags and make sure to unmask the appropriate
-version of sys-cluster/openmpi. Long options and full package
-atoms are used, but not required.
-
-1.) Sync the science overlay.
-
-2.) Emerge empi
-
-3.) Setup /etc/portage/package stuff.
- # echo ">=sys-cluster/openmpi-1.2.5-r1 pbs fortran romio smp" >> /etc/portage/package.use
- # echo ">=sys-cluster/openmpi-1.2.5-r1" >> /etc/portage/package.keywords
-
-4.) Create the implementation.
- # empi --create --class mpi-openmpi =sys-cluster/openmpi-1.2.5-r1
-
-5.) Add packages.
- # empi --add --class mpi-openmpi hpl mpi-examples
-
-6.) Setup your user.
- $ eselect mpi set mpi-openmpi
- $ echo <<-EOF >> .bash_profile
-for i in $(ls ${HOME}/.env.d/*); do
- source ${i}
-done
-EOF
- $ source .bash_profile
-
-7.) Do stuff, or decide this is all worthless and cleanup the mess.
- # empi --delete mpi-openmpi
-
-
-= Links =
-http://dev.gentoo.org/~vapier/CROSS-COMPILE-HOWTO
-http://archives.gentoo.org/gentoo-cluster/msg_f29032b0d85f7f47d9e52940e9322d91.xml
-http://dev.gentoo.org/~jsbronder/empi.xml
diff --git a/sys-cluster/empi/files/empi-0.10 b/sys-cluster/empi/files/empi-0.10
deleted file mode 100644
index cf41dbbce..000000000
--- a/sys-cluster/empi/files/empi-0.10
+++ /dev/null
@@ -1,497 +0,0 @@
-#!/bin/bash
-VERSION=0.10
-
-source /etc/init.d/functions.sh
-
-die(){
- if [ -n "${1}" ]; then
- echo; eerror $1; echo
- fi
- exit 1
-}
-
-has() {
- [[ " ${@:2} " == *" $1 "* ]]
-}
-
-usage(){
- local rc=${1:-0}
- shift
-cat <<-EOF
-empi-${VERSION}
-Usage: ${HILITE}empi${NORMAL} ${GOOD}[actions]${NORMAL} ${BRACKET}[options]${NORMAL}
-
-Actions:
- ${GOOD}-c, --create${NORMAL} pkgspec (Re)Initialize setup for mpi class.
- ${GOOD}-a, --add${NORMAL} pkgspec(s) Add packages using specified mpi class.
- ${GOOD}-d, --delete${NORMAL} class Remove everything related to specified class.
-
-Options:
- ${GOOD}-C, --class${NORMAL} class MPI class to use.
- ${GOOD}-t, --tree${NORMAL} path Path to portage tree to use ebuilds from.
- ${GOOD}-o, --overlaydir${NORMAL} path Directory to use for the empi portage overlay.
- Defaults to MPI_OVERLAY_DIR [${DEFAULT_MPI_OVERLAY_DIR}]
- ${GOOD} --noemerge${NORMAL} Do not call emerge, only preform overlay setup.
-
-Notes:
- ${HILITE}-${NORMAL} pkgspec is specified by a package string. Without a version, the
- portageq best_visible is used. For example, all of the following
- are valid: openmpi, sys-cluster/openmpi, =sys-cluster/openmpi-1.2.5.
- ${HILITE}-${NORMAL} class (-c) is user defined but must be prefixed with "mpi-"
-
-Examples:
-${BRACKET}Create a new class based on openmpi.${NORMAL}
- empi --create sys-cluster/openmpi --class mpi-ompi
-${BRACKET}Rebuild the above.${NORMAL}
- emerge mpi-ompi/openmpi
-${BRACKET}Add hpl to mpi-ompi${NORMAL}
- empi --class mpi-ompi --add sys-cluster/hpl
-EOF
- [[ -n $* ]] && echo && eerror "Error: $*"
- exit ${rc}
-}
-
-class_is_valid() {
- [[ -z ${CLASS} ]] && usage 1 "No class defined."
- [[ ${CLASS} != mpi-* ]] && usage 1 "Classes must be prefixed with mpi-"
- [[ ${CLASS//./} != ${CLASS} ]] && usage 1 "Classes cannot contain . (period)"
-}
-
-is_class_category() {
- local i
- for i in $(eselect mpi list -p); do
- [[ ${1} == ${i} ]] && return 0
- done
- return 1
-}
-
-split_atom() {
- local cpv c pf pn pv
- cpv=$(portageq best_visible / ${1})
- if [[ -z ${cpv} || ${rc} -ne 0 ]]; then
- cpv=$(portageq best_visible / =${1})
- [[ -z ${cpv} || ${rc} -ne 0 ]] && return 1
- fi
- c=${cpv%/*}; pf=${cpv#${c}/}; pn=${pf%%-[0-9]*}; pv=${pf#${pn}-}
- echo "${c} ${pn} ${pv}"
-}
-
-parse_pkgspecs() {
- local atom i
- for ((i=0; i<${#TARGETS[@]}; i++)); do
- atom=($(split_atom ${TARGETS[i]}))
- if [[ $? -ne 0 ]]; then
- eerror "Unable to find a unique package or valid version for ${TARGETS[i]}"
- eerror "Is the package unmasked and unblocked normally?"
- die ""
- fi
- TARGETS[i]=${atom[0]}/${atom[1]}-${atom[2]}
- done
-}
-
-# handle_etc_portage package_spec
-# parses /etc/portage/package.{keywords,use}. If ${CLASS}/${pn} is seen, we don't
-# do a thing. Otherwise copy any lines that have ${cat}/${pn} inserting them again
-# with the new category. Also keywords virtual/${CLASS} if necessary.
-handle_etc_portage() {
- local atom=( $(split_atom ${1}) )
- local ext line gfiles f
-
- for ext in "keywords" "use"; do
- if [ -d /etc/portage/package.${ext} ]; then
- gfiles="/etc/portage/package.${ext}/*"
- f=/etc/portage/package.${ext}/${CLASS}
- else
- gfiles="/etc/portage/package.${ext}"
- f=/etc/portage/package.${ext}
- fi
-
- if ! grep "^[>=<]*${CLASS}/${atom[1]}" ${gfiles} &>/dev/null; then
- grep -h "^[>=<]*${atom[0]}/${atom[1]}" ${gfiles} 2>/dev/null \
- | sed "s,${atom[0]},${CLASS}," \
- | while read line; do
- echo "${line}" >> ${f}
- [[ ${VERBOSE} -ne 0 ]] \
- && einfo "Addition to ${f}: ${line}"
- done
- elif [[ ${VERBOSE} -ne 0 ]]; then
- ewarn "Keys for ${CLASS}/${atom[1]} already exist in ${f}. Will not replicate them."
- fi
-
- if ! grep "^${CLASS}/mpi" ${gfiles} &>/dev/null; then
- grep -h "^virtual/mpi" ${gfiles} 2>/dev/null \
- | sed "s,/mpi,/${CLASS}," \
- | while read line; do
- echo "${line}" >> ${f}
- [[ ${VERBOSE} -ne 0 ]] \
- && einfo "Addition to ${f}: ${line}"
- done
- elif [[ ${VERBOSE} -ne 0 ]]; then
- ewarn "Keys for virtual/${CLASS} already exist. Will not replicate."
- fi
- done
-}
-
-
-
-get_ebuild_dir() {
- local d a
- local want_uses_mpi=${2:-0}
- local found=0
-
- a=($(split_atom ${1}))
- [[ $? -ne 0 ]] && die "Unable to find a unique package or valid version for ${1}."
- is_class_category ${a[0]} && die "It makes no sense to build a new mpi-class from a current one."
-
- if [[ -z ${PORTAGE_TREE} ]]; then
- for d in $(portageq portdir_overlay) $(portageq portdir); do
- if [[ ${want_uses_mpi} -ne 0 ]]; then
- [[ -f "${d}/${a[0]}/${a[1]}/${a[1]}-${a[2]}.ebuild" ]] \
- && ebuild_uses_mpi ${d}/${a[0]}/${a[1]} ${a[1]}-${a[2]} \
- && found=1
- else
- [[ -f "${d}/${a[0]}/${a[1]}/${a[1]}-${a[2]}.ebuild" ]] && found=1
- fi
- [[ ${found} -ne 0 ]] && break
- done
- if [[ ${found} -ne 0 ]]; then
- PORTAGE_TREE=${d}
- else
- die "Could not find an ebuild for ${a[0]}/${a[1]}-${a[2]}."
- fi
- fi
-
- EBUILD_DIR="${PORTAGE_TREE}/${a[0]}/${a[1]}"
-}
-
-ebuild_uses_mpi() {
- grep 'inherit .*mpi' "${1}/${2##*/}.ebuild" &>/dev/null
-}
-
-link_ebuild_dir() {
- ln -snf "${EBUILD_DIR}" "${MPI_OVERLAY_DIR}"/${CLASS}/${EBUILD_DIR##*/} \
- || die "Failed to link ${EBUILD_DIR} to ${MPI_OVERLAY_DIR}/${CLASS}/${EBUILD_DIR##*/}"
-}
-
-# TODO: Needs to be called after get_ebuild_dir which sets $PORTAGE_TREE
-create_virtual_mpi() {
- local d_dir="${MPI_OVERLAY_DIR}"/virtual/${CLASS}
- local version d_file mpi_ebuild s_dir
-
- # Try to get virtual/mpi from the same tree as the other ebuilds.
- # Otherwise we fall back and get it from anywhere.
- version=$(portageq best_visible / ${__VIRTUAL_MPI_VERSION})
- version=${version#virtual/mpi-}
-
- for s_dir in ${PORTAGE_TREE} $(portageq portdir_overlay) $(portageq portdir); do
- mpi_ebuild="${s_dir}"/virtual/mpi/mpi-${version}.ebuild
- [ -f "${mpi_ebuild}" ] && break;
- done
-
- [[ ! -f "${mpi_ebuild}" ]] \
- && die "Cannot satisfy ${__VIRTUAL_MPI_VERSION}"
-
- d_file=${CLASS}-${version}.ebuild
-
- mkdir -p "${d_dir}" || die "Could not create ${d_dir}"
-
- cp "${mpi_ebuild}" "${d_dir}"/${d_file} \
- || die "Could not copy ${mpi_ebuild} to ${d_dir}/${d_file}"
-
- sed -i "s,sys-cluster/,${CLASS}/," ${d_dir}/${d_file}
- ebuild ${d_dir}/${d_file} digest > /dev/null \
- || die "Failed to digest ${d_dir}/${d_file}"
-}
-
-set_metadata() {
- # Snagged from crossdev: http://git.overlays.gentoo.org/gitweb/?p=proj/crossdev.git
- # 3cab8c394fec72f2353e209d98429dd1aaf1d337
-
- # for people who have eclasses spread over their overlays, generate
- # a layout.conf file so portage can find them. this is a crapshoot
- # when diff overlay sources have conflicting eclasses, but nothing
- # we really can do about that.
- local autogen_tag="# Autogenerated and managed by empi"
- local meta=${MPI_OVERLAY_DIR}/metadata
- local layout=${meta}/layout.conf
- local d name masters thin_manifests="false"
-
- mkdir -p "${meta}"
- if [[ -e ${layout} ]] ; then
- if ! grep -qs "^${autogen_tag}" "${layout}" ; then
- einfo "leaving metadata/layout.conf alone in ${MPI_OVERLAY_DIR}"
- return
- fi
-
- # We are managing it, so blow it away
- rm -f "${layout}"
- fi
-
- # build up a list of possible repos where we can pull from
- for d in ${PORTDIR_OVERLAY} "${PORTDIR}" ; do
- [[ -z ${d} ]] && continue
-
- name=
- if [[ -e ${d}/profiles/repo_name ]] ; then
- name=$(<"${d}"/profiles/repo_name)
- fi
- [[ -z ${name} ]] && continue
-
- # If this repo has an eclass dir, mark it as a master.
- # Note: portage reads the masters list in reverse order,
- # so we have to prepare it the same way.
- if [[ -d ${d}/eclass ]] ; then
- has ${name} ${masters} || masters="${name} ${masters}"
- fi
-
- # If one of the overlays uses thin manifests, then turn it on
- if [[ -z ${this_manifests} ]] && has ${name} ${masters} && \
- sed \
- -e 's:#.*::' \
- -e 's:^[[:space:]]*::' \
- -e 's:[[:space:]]*$::' \
- -e 's:[[:space:]]*=[[:space:]]*:=:' \
- "${d}/metadata/layout.conf" 2>/dev/null | \
- gawk -F= '{
- if ($1 == "use-manifests") um = $2
- if ($1 == "thin-manifests") tm = $2
- }
- END {
- exit !(um != "false" && tm == "true")
- }'
- then
- einfo "enabling thin-manifests due to ${d}"
- this_manifests="use-manifests = true\nthin-manifests = true"
- fi
- done
-
- # write out that layout.conf!
- cat <<-EOF > "${layout}"
- ${autogen_tag}
- # Delete the above line if you want to manage this file yourself
- masters = ${masters% }
- $(printf '%b' "${this_manifests}")
- EOF
-}
-
-do_emerge() {
- [[ ${DO_EMERGE} -eq 0 ]] && return 0
- einfo "Emerging $*"
- emerge ${EMERGE_OPTS} $* || die "emerge failed!"
-}
-
-# We should have only one target here.
-create_class() {
- local mpi_class_pkg d mpi_class_pn
-
- [[ ${#TARGETS[@]} -ne 1 ]] && die "Can only create one class at a time."
-
- for d in $(eselect mpi list -p); do
- [ "${d}" == "${CLASS}" ] && die "${CLASS} has already been created."
- done
-
- # Prevent laziness
- [[ ${TARGETS[0]} == ${TARGETS[0]##*/} ]] \
- && TARGETS[0]="sys-cluster/${TARGETS[0]}"
-
- parse_pkgspecs
- get_ebuild_dir ${TARGETS[0]} 1
- create_virtual_mpi
- mpi_class_pn=${EBUILD_DIR##*/}
- mpi_class_pkg=${TARGETS[0]}
- handle_etc_portage ${TARGETS[0]}
- TARGETS[0]="=${CLASS}/${TARGETS[0]##*/}"
-
- # Refuse to break systems. If there is already a class
- # installed in that directory, we're not going to add another one as
- # the eclass doesn't fix one problem just to introduce a bigger one.
- for d in $(find ${MPI_OVERLAY_DIR}/${CLASS} -maxdepth 1 -mindepth 1 -type l 2>/dev/null);do
- d=${d##*/}
- [[ ${d} == ${mpi_class_pn} ]] && continue
- for i in ${MPI_ALL_IMPS}; do
- [[ ${i} == ${d} ]] \
- && die "${CLASS} already has MPI implementation ${d}, refusing to add ${mpi_class_pn}"
- done
- done
-
- if [[ -d "${MPI_OVERLAY_DIR}"/${CLASS} ]]; then
- [[ ${VERBOSE} -ne 0 ]] && ewarn "Overlay for ${CLASS} has already been created."
- else
- mkdir -p ${MPI_OVERLAY_DIR}/${CLASS}
- link_ebuild_dir
- set_metadata
- fi
- if ! grep "^${CLASS}$" /etc/portage/categories &>/dev/null; then
- echo "${CLASS}" >> /etc/portage/categories
- fi
-
-
-cat << EOF
-Creating ${HILITE}${CLASS}${NORMAL}
- Class: ${GOOD}${CLASS}${NORMAL}
- MPI Implementation: ${GOOD}${mpi_class_pkg}${NORMAL}
- Source: ${GOOD}${EBUILD_DIR}${NORMAL}
- Destination: ${GOOD}${MPI_OVERLAY_DIR}/${CLASS}${NORMAL}
-EOF
- do_emerge ${TARGETS[0]}
-}
-
-
-add_packages(){
- local i j deps
-
- [[ -d "${MPI_OVERLAY_DIR}"/${CLASS} ]] || die "Class ${CLASS} has not been created yet."
- [[ ${#TARGETS[@]} -lt 1 ]] && die "You need to specify at least one package"
-
- parse_pkgspecs
- for ((i=0;i<${#TARGETS[@]};i++)); do
- get_ebuild_dir ${TARGETS[i]}
- create_virtual_mpi
- if ebuild_uses_mpi ${EBUILD_DIR} ${TARGETS[i]}; then
- link_ebuild_dir
- handle_etc_portage ${TARGETS[i]}
- TARGETS[i]="=${CLASS}/${TARGETS[i]##*/}"
- else
- TARGETS[i]="=${TARGETS[i]}"
- fi
-
- # I don't know about this, but do you have a better idea?
- deps="$(emerge --color=n --onlydeps -p --quiet ${TARGETS[i]} | grep '^\[')"
- if [[ $? -ne 0 ]]; then
- emerge --onlydeps -p ${TARGETS[i]}
- die "Unable to calculate deps for ${TARGETS[i]}"
- fi
- deps=( $(echo ${deps} | sed -e 's:\[[a-z]* [A-Z] \] :=:g') )
- for ((j=0;j<${#deps[@]};j++)); do
- get_ebuild_dir ${deps[j]}
- if ebuild_uses_mpi ${deps[i]}; then
- link_ebuild_dir
- fi
- done
- done
-cat << EOF
-Adding packages to ${HILIGHT}${CLASS}${NORMAL}
- Packages: ${GOOD}${TARGETS[@]}${NORMAL}
-EOF
- do_emerge ${TARGETS[@]}
-}
-
-
-delete_class() {
- local pkgs=( $(ls /var/db/pkg/${CLASS}/ 2>/dev/null) )
- local ext d i rc
- [[ -d "${MPI_OVERLAY_DIR}"/${CLASS} ]] || die "Class ${CLASS} has not been created yet."
- rc=0
-
- for (( i=0; i<${#pkgs[@]}; i++)); do
- pkgs[i]="=${CLASS}/${pkgs[i]}"
- done
-
- if [[ ${#pkgs[@]} -gt 0 ]] && ! emerge -C ${EMERGE_OPTS/-u/} ${pkgs[@]}; then
- die "Failed to unmerge ${pkgs[@]}"
- fi
-
- for ext in "keywords" "use"; do
- if [ -d /etc/portage/package.${ext} ]; then
- rm /etc/portage/package.${ext}/${CLASS} &>/dev/null
- rc=$((rc+$?))
- elif [ -f /etc/portage/package.${ext} ]; then
- sed -i -e "/^${CLASS}\//d" /etc/portage/package.${ext}
- rc=$((rc+$?))
- fi
- done
-
- [ ! -f /etc/portage/categories ] || sed -i -e "/^${CLASS}$/d" /etc/portage/categories
- rc=$((rc+$?))
-
- for d in $(ls "${MPI_OVERLAY_DIR}"/${CLASS}/ 2>/dev/null); do
- rm "${MPI_OVERLAY_DIR}"/${CLASS}/${d}
- rc=$((rc+$?))
- done
-
- for d in "${MPI_OVERLAY_DIR}/${CLASS}" /var/db/pkg/${CLASS}; do
- [ ! -d "${d}" ] || rmdir "${d}"
- rc=$((rc+$?))
- done
-
- [[ ${rc} -ne 0 ]] \
- && ewarn "Errors were encountered during delete_class()"
- return ${rc}
-}
-
-# Internal variables.
-__VIRTUAL_MPI_VERSION=">=virtual/mpi-2.0"
-
-ACTION=""
-CLASS=""
-PORTAGE_TREE=""
-MPI_OVERLAY_DIR=""
-VERBOSE=0
-DO_EMERGE=1
-EMERGE_OPTS="-u" # Packages can be recompiled by hand if necessary.
-TARGETS=""
-DEFAULT_MPI_OVERLAY_DIR=/var/cache/overlays/mpi
-MAKE_CONF=/etc/make.conf
-
-PORTDIR_OVERLAY=""
-PKGDIR=""
-
-EBUILD_DIR=""
-
-while [[ $# -gt 0 ]]; do
- case $1 in
- -h|--help)
- usage;;
- -c|--create)
- ACTION="${ACTION}create";;
- -a|--add)
- ACTION="${ACTION}add";;
- -d|--delete)
- ACTION="${ACTION}delete"
- shift; CLASS=${1};;
- -C|--class)
- shift; CLASS=${1};;
- -t|--tree)
- shift; PORTAGE_TREE=${1};;
- -o|--overlaydir)
- shift; MPI_OVERLAY_DIR=${1};;
- -v|--verbose)
- VERBOSE=1;;
- --noemerge)
- DO_EMERGE=0;;
- -*)
- EMERGE_OPTS="${EMERGE_OPTS} ${1}";;
- *)
- TARGETS=( $(echo ${TARGETS[@]}) ${1} );;
- esac
- shift
-done
-
-[[ ${UID} -ne 0 ]] && die "You must be root to preform any actions."
-
-if [ -s /etc/portage/make.conf ]; then
- MAKE_CONF=/etc/portage/make.conf
-fi
-
-: ${MPI_OVERLAY_DIR:=$(portageq envvar MPI_OVERLAY_DIR)}
-if [ -z "${MPI_OVERLAY_DIR}" ]; then
- MPI_OVERLAY_DIR=${DEFAULT_MPI_OVERLAY_DIR}
- einfo "MPI_OVERLAY_DIR not set, defaulting to ${MPI_OVERLAY_DIR} and updating make.conf"
- echo "MPI_OVERLAY_DIR=\"${MPI_OVERLAY_DIR}\"" >> ${MAKE_CONF}
-fi
-
-if [ ! -d "${MPI_OVERLAY_DIR}" ]; then
- mkdir -p "${MPI_OVERLAY_DIR}" || die "Failed to mkdir ${MPI_OVERLAY_DIR}"
-fi
-
-export PORTDIR_OVERLAY="${MPI_OVERLAY_DIR} $(portageq portdir_overlay)"
-export PKGDIR="$(portageq envvar PKGDIR)/mpi/${CLASS}"
-export PORTDIR="$(portageq envvar PORTDIR)"
-
-[[ -z ${ACTION} ]] && usage 1 "No action defined."
-class_is_valid
-
-set_metadata
-[[ ${ACTION} == *create* ]] && create_class
-[[ ${ACTION} == *add* ]] && add_packages
-[[ ${ACTION} == *delete* ]] && delete_class
diff --git a/sys-cluster/empi/files/eselect.mpi-0.10 b/sys-cluster/empi/files/eselect.mpi-0.10
deleted file mode 100644
index 2c7a56776..000000000
--- a/sys-cluster/empi/files/eselect.mpi-0.10
+++ /dev/null
@@ -1,273 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-DESCRIPTION="Manage MPI classes"
-MAINTAINER="jsbronder@gentoo.org"
-SVN_DATE='$Date: $'
-VERSION="0.0.2"
-
-inherit path-manipulation config
-
-# The basic idea is we want to allow every use to select their own mpi
-# implementation they want, and a ${HOME}/.env.d/mpi file is created for them.
-# A user then is -required- to source the env file. This sets PATH, MANPATH,
-# and LD_LIBRARY_PATH. I'm sure I'm forgetting something here.
-# Calling unset only wipes out the env file, replacing it with what we
-# previously added stripped out.
-
-# If you can think of a better way to do this, while still allowing user's
-# freedom, please let me know.
-
-# List the valid mpi classes currently installed.
-find_classes() {
- local classes
- for f in ${ROOT}/etc/env.d/mpi/*; do
- [[ -f ${f} ]] || continue
- f=$(basename ${f})
- [[ "${f#mpi-}" == "${f}" ]] && continue
- classes=(${classes[@]} ${f})
- done
- echo ${classes[@]}
-}
-
-# User's current environment has the class configured in it.
-is_in_use() { [ "${ESELECT_MPI_IMP}" == "${1}" ]; }
-
-# User's env file is ready for sourcing for this class
-is_enabled() {
- [ "$(var_from_user_envd ESELECT_MPI_IMP)" == "${1}" ]
-}
-
-var_from_user_envd(){
- [ ! -f ${user_ev_sh} ] && return 0
- echo "$(source ${user_ev_sh}; echo ${!1})"
-}
-
-# Is this a valid class?
-is_class() {
- local classes=$(find_classes)
- for i in ${classes[@]}; do
- [[ "${i}" == "${1}" ]] && return 0
- done
- return 1
-}
-
-init() {
- local d
- [[ ${UID} -eq 0 ]] && HOME="${ROOT}/root"
- d="$(canonicalise "${ROOT}/${HOME}")"
- d="${d}/.env.d/"
- user_ev_sh="${d}mpi.sh";
- user_ev_csh="${d}mpi.csh";
-
- if [[ ! -d "${d}" ]]; then
- mkdir "${d}" || die -q "Failed to create ${d}."
- elif [[ ! -w "${d}" ]]; then
- die -q "You do not have permission to mkdir ${d}."
- fi
- [[ -f "${user_ev_sh}" && ! -w "${user_ev_sh}" \
- && -f "${user_ev_csh}" && ! -w "${user_ev_csh}" ]] \
- && die -q "You do not have permission to write to ${user_ev_sh} or ${user_ev_csh}."
-}
-
-global_env() {
- local d=$(canonicalise "${ROOT}/etc/env.d/mpi/${1}")
- [ -z "${d}" ] && die "Cannot find global env file for ${1}"
- ev=${d}
-}
-
-### list action ###
-
-describe_list() { echo "List available classs"; }
-describe_list_parameters() { echo "[-p]"; }
-
-do_list() {
- classes=( $(find_classes) )
- init
- if [[ ${@} == *-p* ]]; then
- echo "${classes[@]}"
- else
- write_list_start "Available MPI classs:"
- if [[ -n "${classes[@]}" ]]; then
- for (( i=0; i<${#classes[@]}; i++ )); do
- if is_in_use ${classes[$i]} && is_enabled ${classes[$i]}; then
- write_kv_list_entry "${classes[$i]}" "Enabled, In Use"
- elif is_in_use ${classes[$i]}; then
- write_kv_list_entry "${classes[$i]}" "In Use"
- elif is_enabled ${classes[$i]}; then
- write_kv_list_entry "${classes[$i]}" "Enabled"
- else
- write_kv_list_entry "${classes[$i]}" "--"
- fi
- done
- else
- write_kv_list_entry "(none found)" ""
- fi
- fi
- return 0
-}
-
-
-### set action ###
-
-describe_set() {
- echo "Select a MPI class."
-}
-
-describe_set_parameters() {
- echo "<target>"
-}
-
-do_set() {
- local binpath lld manpath current_imp
-
- init
- current_imp="$(var_from_user_envd ESELECT_MPI_IMP)"
- global_env ${1}
-
- [[ -z ${1} ]] && die -q "You didnt specifiy any class for use."
- [[ ${#@} -ne 1 ]] && die -q "You may only select exactly one class."
- ! is_class ${1} && die -q "${1} is not an class."
- if is_enabled ${1}; then
- echo "${1} implemention is currently in use. This is a no-op."
- return
- elif [ -n "${current_imp}" ]; then
- echo "Cannot select ${1} when ${current_imp} is in use."
- return 1
- fi
-
- binpath="$(load_config ${ev} PATH)"
- lld="$(load_config ${ev} LD_LIBRARY_PATH)"
- manpath="$(load_config ${ev} MANPATH)"
-
-cat <<-EOF >${user_ev_sh}
-bpl=\`expr "\${PATH}" : ".*${binpath}:"\`
-mpl=\`expr "\${MANPATH}" : ".*${manpath}:"\`
-llpl=\`expr "\${LD_LIBRARY_PATH}" : ".*${lld}:"\`
-
-if [ \${bpl} -eq 0 ]; then
- export PATH="${binpath}:\${PATH}"
-fi
-
-if [ \${mpl} -eq 0 ]; then
- export MANPATH="${manpath}:\${MANPATH}"
-fi
-
-if [ \${llpl} -eq 0 ]; then
- export LD_LIBRARY_PATH="${lld}:\${LD_LIBRARY_PATH}"
-fi
-export ESELECT_MPI_IMP="${1}"
-EOF
-
-cat <<-EOF >${user_ev_csh}
-set bpl=\`expr "\${PATH}" : ".*${binpath}:"\`
-set mpl=\`expr "\${MANPATH}" : ".*${manpath}:"\`
-set llpl=\`expr "\${LD_LIBRARY_PATH}" : ".*${lld}:"\`
-
-if ( \$bpl == 0 ) \
- setenv PATH "${binpath}:\${PATH}"
-
-if ( \$mpl == 0 ) \
- setenv MANPATH "${manpath}:\${MANPATH}"
-
-if ( \$llpl == 0 ) \
- setenv LD_LIBRARY_PATH "${lld}:\${LD_LIBRARY_PATH}"
-
-setenv ESELECT_MPI_IMP "${1}"
-EOF
-
- echo "Remember to source /etc/profile or /etc/csh.login"
-}
-
-
-### unset action ###
-describe_unset() {
- echo "Restore MPI-less environment."
-}
-
-do_unset() {
- local lld current_imp
- init
-
- current_imp="$(var_from_user_envd ESELECT_MPI_IMP)"
-
- if [ -z "${current_imp}" ]; then
- echo "No implemention currently in use. This is a no-op."
- return
- fi
-
- global_env "${ESELECT_MPI_IMP}"
- lld="$(load_config ${ev} LD_LIBRARY_PATH)"
-
- # PATH and MANPATH are reset in /etc/profile.
-cat <<-EOF > ${user_ev_sh}
-unset ESELECT_MPI_IMP
-l=\`expr "\${LD_LIBRARY_PATH}:" : ".*${lld}:"\`
-l=\$(( \${l} + 1 ))
-
-if [ \${l} -gt 1 ]; then
- export LD_LIBRARY_PATH="\`expr substr \${LD_LIBRARY_PATH} \${l} 1024\`"
-fi
-EOF
-
-cat <<-EOF > ${user_ev_csh}
-unsetenv ESELECT_MPI_IMP
-set l=\`expr "\${LD_LIBRARY_PATH}:" : ".*${lld}:"\`
-@ l = ( \${l} + 1 )
-
-if ( \${l} > 1 ) \
- setenv LD_LIBRARY_PATH "\`expr substr \${LD_LIBRARY_PATH} \${l} 1024\`"
-EOF
-
- echo "Remember to source /etc/profile or /etc/csh.login"
-}
-
-### add action (from skel pretty much)
-describe_add() {
- echo "Add a new mpi class"
-}
-
-describe_add_parameters() {
- echo "<file>"
-}
-
-do_add() {
- local class
- [[ ${#@} -ne 1 ]] \
- && die -q "Bad arguments, use: mpi add /some/full/path/<class>.eselect"
-
- # If $D is set, we're adding from portage so we want to respect sandbox.
- # Otherwise, respect the ROOT variable.
- local PREFIX=${D:-${ROOT}/}
-
- # Create directory if necessary
- if [[ ! -e ${PREFIX}/etc/env.d/mpi/ ]]; then
- mkdir -p ${PREFIX}/etc/env.d/mpi/
- else
- if [[ ! -d ${PREFIX}/etc/env.d/mpi/ ]]; then
- die -q "${PREFIX}/etc/env.d/mpi/ exists but isn't a directory!"
- fi
- fi
-
- class=$(basename ${1}); class=${class%.eselect}
- if ! cp ${1} ${PREFIX}/etc/env.d/mpi/${class}; then
- die -q "Installing ${1} as ${PREFIX}/etc/env.d/mpi/${class} failed!"
- fi
-}
-
-
-### printvar action ###
-describe_printvar() { echo "Print variables stored in global env.d file."; }
-describe_printvar_parameters() { echo "<class> <variable>"; }
-
-do_printvar() {
- if [[ ${#@} -ne 2 ]] \
- || ! is_class ${1}; then
- die -q "Specify exactly 1 class and 1 variable."
- fi
- global_env ${1}
- echo "$(load_config ${ev} ${2})"
-}
-
-# vim: ft=eselect:noet
-
diff --git a/sys-cluster/empi/files/mpi.csh b/sys-cluster/empi/files/mpi.csh
deleted file mode 100644
index 32506b4cc..000000000
--- a/sys-cluster/empi/files/mpi.csh
+++ /dev/null
@@ -1,3 +0,0 @@
-if ( -d "${HOME}"/.env.d && -f "${HOME}"/.env.d/mpi.csh ) then
- source "${HOME}"/.env.d/mpi.csh
-endif
diff --git a/sys-cluster/empi/files/mpi.sh b/sys-cluster/empi/files/mpi.sh
deleted file mode 100644
index 5483247e5..000000000
--- a/sys-cluster/empi/files/mpi.sh
+++ /dev/null
@@ -1,3 +0,0 @@
-if [ -d "${HOME}"/.env.d -a -f "${HOME}"/.env.d/mpi.sh ]; then
- source "${HOME}"/.env.d/mpi.sh
-fi
diff --git a/sys-cluster/empi/metadata.xml b/sys-cluster/empi/metadata.xml
deleted file mode 100644
index c74b39b01..000000000
--- a/sys-cluster/empi/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>jsbronder@gentoo.org</email>
- </maintainer>
- <maintainer type="project">
- <email>cluster@gentoo.org</email>
- <name>Gentoo Cluster Project</name>
- </maintainer>
-</pkgmetadata>