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* package.mask: mask jtreeview for removalAndrew Ammerlaan2022-01-211-0/+4
* sci-libs/pytorch: revbump as per previous commitHorea Christian2022-01-181-0/+0
* sci-libs/pytorch: removed deprecated sys-fabric/libibverbs depHorea Christian2022-01-181-2/+2
* dev-python/geopandas: new 0.10.2Thomas Bettler2022-01-183-0/+54
* dev-python/fiona: new 1.8.20Thomas Bettler2022-01-183-0/+93
* dev-python/rasterstats: new 0.16.0Thomas Bettler2022-01-183-0/+49
* dev-python/rasterio: new 1.2.10Thomas Bettler2022-01-183-0/+123
* dev-python/snuggs: new 1.4.7Thomas Bettler2022-01-183-0/+44
* dev-python/affine: new 2.3.0Thomas Bettler2022-01-183-0/+36
* dev-python/cligj: new 0.7.2Thomas Bettler2022-01-183-0/+38
* sci-libs/pydicom: update to 2.2.2, py3.10 supportMiezhiko2022-01-182-0/+28
* dev-python/numba: bump version to 0.55.0YiyangWu2022-01-162-0/+86
* dev-python/astropy-healpix: remove unneeded dependencyAndrew Ammerlaan2022-01-161-2/+1
* package.mask: mask opennlp-maxent for removalAndrew Ammerlaan2022-01-161-0/+1
* dev-python/llvmlite: bump version to 0.38.0YiyangWu2022-01-162-0/+61
* dev-python/cadquery-ocp: gles2 flag dropped from vtkAndrew Ammerlaan2022-01-161-1/+1
* sci-biology/fsl: drop oldAndrew Ammerlaan2022-01-153-371/+0
* sci-visualization/surf-ice: drop unavailable flagAndrew Ammerlaan2022-01-151-2/+2
* sci-biology/ngs: properly use the java eclassAndrew Ammerlaan2022-01-151-3/+3
* sci-biology/fastqc: drop useless blank lineAndrew Ammerlaan2022-01-151-1/+0
* sci-biology/salmon: drop unavailable flagAndrew Ammerlaan2022-01-151-2/+2
* sci-biology/pbcopper: drop unavailable flagAndrew Ammerlaan2022-01-151-2/+2
* sci-biology/pbbam: drop unavailable flagAndrew Ammerlaan2022-01-151-2/+2
* dev-cpp/blitz: drop unavailable flagAndrew Ammerlaan2022-01-151-2/+2
* package.use.mask: mask R and go flags on mlpackAndrew Ammerlaan2022-01-151-0/+6
* sci-libs/mlpack: fix pytest-runner errorAndrew Ammerlaan2022-01-151-4/+10
* sci-mathematics/freefem++: drop conflicting flag mpiAndrew Ammerlaan2022-01-152-4/+4
* sci-biology/minimap2: version bump 2.24, add python flagAndrew Ammerlaan2022-01-153-58/+64
* package.mask: mask jigsaw for removalAndrew Ammerlaan2022-01-151-0/+5
* sci-biology/ngs: add missing dep on java compilerAndrew Ammerlaan2022-01-151-0/+1
* sci-biology/fastqc: version bump to 0.11.9Andrew Ammerlaan2022-01-155-109/+42
* sci-biology/pybedtools: bump to version 0.8.2Andrew Ammerlaan2022-01-152-23/+14
* profiles/updates: fix pkg moveAndrew Ammerlaan2022-01-151-1/+1
* profiles/updates: move sra_sdk to sra-toolsAndrew Ammerlaan2022-01-157-254/+1
* sci-biology/sra-tools: rename from sra_sdk, add version 2,11,3Andrew Ammerlaan2022-01-156-0/+226
* sci-biology/ncbi-vdb: add new dep of sra-toolsAndrew Ammerlaan2022-01-153-0/+58
* sci-biology/ngs: add new dep of sra-toolsAndrew Ammerlaan2022-01-153-0/+55
* sci-biology/fsl: add version 6.0.5Andrew Ammerlaan2022-01-142-0/+221
* dev-python/fslpy: add version 3.8.1Andrew Ammerlaan2022-01-142-0/+40
* dev-python/trimesh: add version 3.9.42Andrew Ammerlaan2022-01-142-0/+66
* Fixed thrust include path for rocm platformAntonin Riha2022-01-141-0/+1
* sci-biology/spm: cleanup oldAndrew Ammerlaan2022-01-143-76/+0
* package.mask: mask quorum for removalAndrew Ammerlaan2022-01-141-0/+7
* sci-biology/jellyfish: fix configure phase, add missing depsAndrew Ammerlaan2022-01-141-8/+4
* package.mask: mask terra for removalAndrew Ammerlaan2022-01-131-0/+5
* package.mask: mask htsjdk for removalAndrew Ammerlaan2022-01-131-0/+4
* package.use.mask: drop obsolete use maskAndrew Ammerlaan2022-01-131-5/+0
* layout.conf: ban EAPI 6Andrew Ammerlaan2022-01-131-2/+1
* package.mask: mask jhdf5 for removalAndrew Ammerlaan2022-01-131-0/+2
* dev-python/pytorch-lightning: add new packageAndrew Ammerlaan2022-01-133-0/+45