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* dev-python/matplotlib2tikz: Drop oldMarius Brehler2017-02-033-51/+0
| | | | Package-Manager: portage-2.3.3
* sci-libs/atlas: Drop unsupported keywordsMatthias Maier2017-02-021-2/+2
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* virtual/lapack: version bump to 3.7Matthias Maier2017-02-021-0/+43
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* virtual/cblas: version bump to 3.7Matthias Maier2017-02-021-0/+37
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* virtual/blas: bump to 3.7Matthias Maier2017-02-021-0/+57
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/cblas-reference: version bump to 20161223 (3.7.0)Matthias Maier2017-02-023-0/+182
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/cblas-reference: Drop unsupported keywordsMatthias Maier2017-02-021-1/+1
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* sci-libs/lapack-reference: version bump to 3.7.0Matthias Maier2017-02-023-0/+180
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/blas-reference: version bump to 20161223 (3.7.0)Matthias Maier2017-02-023-0/+168
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* Drop unsupported KEYWORDSJustin Lecher2017-02-015-5/+5
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Import main arch.listJustin Lecher2017-02-011-11/+5
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sys-cluster/openmpi: bump 2.0.2Justin Bronder2017-02-012-2/+2
| | | | Package-Manager: portage-2.3.3
* sci-biology/vt: depend on either of the latex packagesMartin Mokrejš2017-01-311-1/+1
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/repeatmasker: add trailing '/' after vendor_perl pathMartin Mokrejš2017-01-311-1/+1
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/repeatmasker: remove escaping backslashes so that the ebuild ↵Martin Mokrejš2017-01-311-8/+8
| | | | | | | | works again Also drop the full paths from configure which otherwise needed EPREFIX mangling Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/trf-bin: trf binary needs glibc-2.14Martin Mokrejš2017-01-311-0/+1
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/trf-bin: reintroduce a symlink from /opt/bin/$MY_PNMartin Mokrejš2017-01-311-0/+1
| | | | | | | The /opt/$MY_PN/bin/ is not in PATH by default so helps other tools to find trf installation easily Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/repeatmasker: fix hardcoded paths to respect EPREFIXMartin Mokrejš2017-01-311-1/+6
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/repeatmasker: more EPREFIX fixesMartin Mokrejš2017-01-311-2/+2
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/repeatmasker: respect EPREFIXMartin Mokrejš2017-01-311-8/+8
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/repeatmasker: add missing call to default in src_prepare()Martin Mokrejš2017-01-311-0/+1
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/repeatmasker: depend on the now renamed packageMartin Mokrejš2017-01-311-1/+2
| | | | | | | Make users uninstall the previously installed files under the sci-biology/trf package name. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/trf-bin: renamed to reflect it is an upstream's binaryMartin Mokrejš2017-01-316-0/+641
| | | | | | | | | | A lot of fixes in the ebuild as well: - install snapshot copies of HTML docs to prevent checksum errors - properly set MY_PV version number - fix install location - distinguish between 32 and 64bit binaries Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/GAL: added additional depsMartin Mokrejš2017-01-311-1/+3
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* dev-perl/Set-IntSpan-Fast: new package, needed for sci-biology/GALMartin Mokrejš2017-01-313-0/+34
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* dev-perl/Data-Types: new package, needed for sci-biology/GALMartin Mokrejš2017-01-312-0/+36
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* dev-perl/Config-Std: new package, needed for sci-biology/GALMartin Mokrejš2017-01-313-0/+39
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/GAL: depend on virtualsMartin Mokrejš2017-01-311-2/+2
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/GAL: add more dependenciesMartin Mokrejš2017-01-311-2/+4
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* Use caches for travisJustin Lecher2017-01-291-0/+1
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/apollo: QA fixesJustin Lecher2017-01-291-14/+5
| | | | | | | | | Bump to EAPI 6 shorten DESCRIPTION drop dead code Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/abacas: QA fixesJustin Lecher2017-01-291-5/+9
| | | | | | | | | Bump to EAPI 6 shorten DESCRIPTION Use optfeature Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/VelvetOptimiser: QA fixesJustin Lecher2017-01-292-6/+5
| | | | | | | | | Bump to EAPI 6 shorten DESCRIPTION Move to perl-functions.eclass Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/Ray: QA fixesJustin Lecher2017-01-291-11/+6
| | | | | | | | | Bump to EAPI 6 shorten DESCRIPTION add static libs support Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/MagicViewer: QA fixesJustin Lecher2017-01-292-5/+5
| | | | | | | | Bump to EAPI 6 shorten DESCRIPTION Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/HTSeq: QA fixesJustin Lecher2017-01-291-4/+5
| | | | | | | | Bump to EAPI 6 shorten DESCRIPTION Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/Gambit: QA fixesJustin Lecher2017-01-292-7/+8
| | | | | | | | | Bump to EAPI 6 shorten DESCRIPTION Add USE=doc Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/FLASH: QA fixesJustin Lecher2017-01-291-6/+3
| | | | | | | | Bump to EAPI 6 shorten DESCRIPTION Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/BG7: QA fixesJustin Lecher2017-01-291-4/+4
| | | | | | | | Bump to EAPI 6 shorten DESCRIPTION Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* net-ftp/bbftp-server: QA fixesJustin Lecher2017-01-291-5/+6
| | | | | | | | Bump to EAPI 6 shorten DESCRIPTION Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* net-ftp/bbftp-client: QA fixesJustin Lecher2017-01-291-3/+4
| | | | | | | | Bump to EAPI 6 shorten DESCRIPTION Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/karect: improve DESCRIPTION lineMartin Mokrejš2017-01-291-2/+2
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/quast: updating to a current version, still incompleteMartin Mokrejš2017-01-292-5/+11
| | | | | | This will need much more work to unbundle all the required stuff. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/SPAdes: install more HTML documentationMartin Mokrejš2017-01-292-2/+8
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/SPAdes: version bump, remove old, src_install actually does also ↵Martin Mokrejš2017-01-293-15/+19
| | | | | | | | | | src_compile Upstream contacted to split compile and install steps into separate procedures. The Gentoo package should be probably renamed to all lowercase letters. Hierarchy in /usr/share/spades/ is a bit awkward. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/pb-honey: QA fixesJustin Lecher2017-01-291-3/+3
| | | | | | | | Bump to EAPI 6 add missing slot operator Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/ball: QA fixesJustin Lecher2017-01-291-3/+3
| | | | | | | | Bump to EAPI 6 add slot operator Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/metaseq: QA fixesJustin Lecher2017-01-291-3/+3
| | | | | | | | Bump to EAPI 6 add missing slot operator Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* dev-python/newrelic: QA fixesJustin Lecher2017-01-292-12/+12
| | | | | | | | Bump to EAPI 6 drop unknown dep Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/flexbar: QA fixesJustin Lecher2017-01-291-4/+5
| | | | | | | | Bump to6 EAPI add missing slot operator Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>