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* *.md: update documentation: repoman --> pkgcheck and friendsAndrew Ammerlaan2022-05-022-57/+27
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* */*: virtual/jpeg deprecationAndrew Ammerlaan2022-05-0221-21/+21
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/superlu_dist: drop masked packageAndrew Ammerlaan2022-05-024-74/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/fsl: drop dep on cuda-10Andrew Ammerlaan2022-05-022-8/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* .github/workflows: only run on push/PRAndrew Ammerlaan2022-05-022-4/+0
| | | | | | | I suspect the cache corruption issue that occurred is due to running a on-push and on-schedule check simultaneously. Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* Drop repoman CI in favour of pkgcheckAndrew Ammerlaan2022-05-022-52/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* .github/workflows/pkgcheck.yml: try re-enable pkgcheckAndrew Ammerlaan2022-05-021-0/+19
| | | | | | | | | | | | Revert "pkgcheck.yml: previous commit was not enough, just remove the file for now" This reverts commit 14ed9ff340aff882ce6ebb42f4b489f3e035aff3. Revert "pkgcheck.yml: disable for now" This reverts commit 6c8402543717d6c12860a6c5ca55ea127d29672f. Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/zarr: add 2.11.3Andrew Ammerlaan2022-05-022-0/+58
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/dandischema: dropped packageHorea Christian2022-05-028-223/+0
| | | | | | superseded by dev-python/dandi-schema Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/dandi-cli: version bumpHorea Christian2022-05-022-0/+87
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/dandi-cli: dependency updateHorea Christian2022-05-022-4/+2
| | | | | | | | | | | | DISTUTILS_USE_PEP517 removal hopefully soon revertable, cuurently fails with: ``` AttributeError: module 'versioneer' has no attribute 'get_version' ``` Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/dandi-cli: dropped old versionHorea Christian2022-05-024-118/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/dandi-schema: new packageHorea Christian2022-05-028-0/+223
| | | | | | | will deprecate dev-python/dandischema Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/fscacher: upstream inplace source archive updateHorea Christian2022-05-021-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/nilearn: version bump and working testsHorea Christian2022-04-282-0/+51
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/llvmlite: LLVM_MAX_SLOT bumpHorea Christian2022-04-254-3/+190
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/samri: renamed dependencyHorea Christian2022-04-251-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/*: server updates for SRC_URIHorea Christian2022-04-257-9/+9
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/nwbinspector: new package (DANDI stack)Horea Christian2022-04-213-0/+45
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/samri_bindata: source mirror unavailableHorea Christian2022-04-151-2/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/samri_bidsdata: source mirror unavailableHorea Christian2022-04-151-2/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/dargcc_bidsdata: source mirror unavailableHorea Christian2022-04-151-2/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/drlfom_bidsdata: source mirror unavailableHorea Christian2022-04-151-2/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/irsabi_bidsdata: source mirror unavailableHorea Christian2022-04-151-2/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/opfvta_bidsdata: source mirror unavailableHorea Christian2022-04-151-2/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/dandi-cli: new packageHorea Christian2022-04-059-0/+361
| | | | | | | Some etelemetry issues remain Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/afni: version patches are identicalHorea Christian2022-04-034-26/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/afni: corrected patch applicationHorea Christian2022-04-031-7/+3
| | | | | | | | ebuild still fails, though, log included in comment and reposited here: https://ppb.chymera.eu/4223de.log Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/afni: bump ebuild still failsHorea Christian2022-04-011-1/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/afni: add 22.0.21, drop 22.0.03Andrew Ammerlaan2022-04-013-7/+27
| | | | | | | | | | Restore patch dropping py2.7 dep TODO: make build system respect *FLAGS TODO: Switch to cmake? This is non-trivial because the cmake build system wants to fetch deps from the internet Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/afni: cleaned up whitespace and unneeded codeHorea Christian2022-04-012-9/+5
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/afni: reinstated working versionsHorea Christian2022-04-016-1/+176
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pycryptodomex: dropped in favour of pycryptodome::gentooHorea Christian2022-03-315-159/+0
| | | | | | | Patch example can be seen in the dev-python/keyrings_alt package. Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/keyrings_alt: compatibility with pycryptodomeHorea Christian2022-03-303-2/+97
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/keyrings_alt: listing upstreamHorea Christian2022-03-301-0/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/zarr: new package (DANDI stack)Horea Christian2022-03-304-0/+130
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/interleave: new package (DANDI stack)Horea Christian2022-03-294-0/+65
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/dandischema: new package (DANDI stack)Horea Christian2022-03-288-0/+223
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/anys: new package (DANDI stack)Horea Christian2022-03-285-0/+84
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pyout: new package (DANDI stack)Horea Christian2022-03-274-0/+90
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pycryptodomex: new package (DANDI stack)Horea Christian2022-03-275-0/+159
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/numcodecs: new package (DANDI stack)Horea Christian2022-03-264-0/+88
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* pkgcheck.yml: previous commit was not enough, just remove the file for nowAndrew Ammerlaan2022-03-261-11/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* pkgcheck.yml: disable for nowAndrew Ammerlaan2022-03-261-8/+0
| | | | | | Cache should expire in 7 days if we do not access it, which should fix the issue Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* pkgcheck.yml: revertAndrew Ammerlaan2022-03-261-5/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* pkgcheck.yml: also add pathAndrew Ammerlaan2022-03-261-0/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* pkgcheck.yml: try to overwrite cache keysAndrew Ammerlaan2022-03-261-0/+4
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* pkgcheck.yml: and now drop this code and see if it works againAndrew Ammerlaan2022-03-261-3/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* pkgcheck.yml: try with if alwaysAndrew Ammerlaan2022-03-261-0/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* pkgcheck.yml: try clearing cache after running pkgcheckAndrew Ammerlaan2022-03-261-2/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>