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* | sci-chemistry/freeon-2013.09.16: Version bump.Nicolas Bock2013-09-163-0/+38
| | | | | | | | Package-Manager: portage-2.2.1
* | Merge pull request #108 from ustcscgy/patch-1Sébastien Fabbro2013-09-151-8/+7
|\ \ | |/ |/| fix ball-9999.ebuild upstream git uri and qt dependencies
| * fix ball-9999.ebuild upstream git uri and qt dependenciesustcscgy2013-09-151-8/+7
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* | sci-chemistry/freeon-2013.09.12: Updated md5 checksum on tar dist.Nicolas Bock2013-09-151-1/+1
| | | | | | | | Package-Manager: portage-2.2.1
* | sci-chemistry/freeon-2013.09.12 Changed versioning of package to avoid maskNicolas Bock2013-09-153-3/+12
|/ | | | | | collision with the live package. Package-Manager: portage-2.2.1
* Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciKacper Kowalik (Xarthisius)2013-09-1592-533/+6050
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| * sci-chemistry/freeon-20130912: Added new version.Nicolas Bock2013-09-143-0/+44
| | | | | | | | Package-Manager: portage-2.2.1
| * added STFC licenseChristoph Junghans2013-09-141-0/+67
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| * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciNicolas Bock2013-09-1414-4/+2581
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| | * Support at least when user passes USE='gnutls -ssl -openssl' but what we ↵Martin Mokrejš2013-09-142-1/+12
| | | | | | | | | | | | really want is to prefer gnutls over openssl if both are available on the system.
| | * Add upstream ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch with ↵Martin Mokrejš2013-09-143-4/+20
| | | | | | | | | | | | line offset changes.
| | * Fix URL to point to a public SVN repositoryMartin Mokrejš2013-09-145-2/+35
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| | * more 12.0.0 cleanup, still not workingMartin Mokrejš2013-09-145-7/+50
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| | * add ↵Martin Mokrejš2013-09-133-2/+28
| | | | | | | | | | | | ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch; get around a bug in the C++ Toolkit's handling of --without-runpath with certain linker versions by running configure with -Wl,-rpath-link,_build/lib in LDFLAGS (assuming _build is an absolute path; otherwise, prepend /home/mmokrejs/proj/sci/sci-biology/ncbi-tools++/) [from Aaron Ucko].
| | * fix version number in the ebuildMartin Mokrejš2013-09-131-1/+1
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| | * Remove redundant connect from DLL_LIB lines.Martin Mokrejš2013-09-131-0/+1
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| | * Remove redundant connect from DLL_LIB lines.Martin Mokrejš2013-09-131-0/+16
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| | * Remove redundant connect from DLL_LIB lines.Martin Mokrejš2013-09-132-2/+2
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| | * No, the fix-creaders-linking is needed for 12.0.0 as well.Martin Mokrejš2013-09-133-0/+25
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| | * Latest release which needs so far only the two Gentoo patches. Would be ↵Martin Mokrejš2013-09-133-0/+2383
| | | | | | | | | | | | better to drop from their filename to avoid their duplication I think.
| | * add glew to dependencies inferrred via mesa; fix lib/libxobjread.so: ↵Martin Mokrejš2013-09-133-2/+25
| | | | | | | | | | | | undefined reference to 'AlignmentFileFree' message by upstream patch
| * | sys-cluster/charm-6.5.1: Small fix in patch to make printing less verbose.Nicolas Bock2013-09-142-1/+4
| | | | | | | | | | | | Package-Manager: portage-2.2.1
| * | sci-chemistry/namd-2.9: Version bump; ported patches from namd-2.7_beta2-r1 ↵Nicolas Bock2013-09-146-0/+297
| |/ | | | | | | | | | | and bumped EAPI to 5. Package-Manager: portage-2.2.1
| * sci-libs/itk: Version bump. Cleaned-up ebuild and metadata.xmlSébastien Fabbro2013-09-116-193/+132
| | | | | | | | Package-Manager: portage-2.2.01.22288-prefix
| * removed obsolete licenseSébastien Fabbro2013-09-111-505/+0
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| * sync with treeSébastien Fabbro2013-09-114-8/+6
| | | | | | | | Package-Manager: portage-2.2.01.22288-prefix
| * sci-biology/biopython-1.62: version bumpMartin Mokrejš2013-09-111-0/+10
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| * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciMartin Mokrejš2013-09-112-7/+13
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| | * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciNicolas Bock2013-09-1115-7/+802
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| | * | sys-cluster/charm-6.5.1: Fix patch for the last time.Nicolas Bock2013-09-112-7/+13
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.2
| * | | sci-biology/biopython-1.62: version bumpMartin Mokrejš2013-09-112-0/+54
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| * | Partial success on removal of all crazy libraries and includes from CFLAGS ↵Martin Mokrejš2013-09-1110-6/+722
| | | | | | | | | | | | | | | | | | and LDFLAGS used throught EMBOSS sources. While compile commandline are now clean still libtool is passed with LDFLAGS carrying over the many X11 and graphics libraries. Seems the source is ltmain.sh which uses on the linker lines but editing m4/libtool.m4 is not the right way to do it. Same applies to ltmain.sh in top-level directory. Any volunteers? Bug #394425 Package-Manager: portage-2.1.12.2
| * | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciMartin Mokrejš2013-09-118-0/+504
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| | * sys-cluster/charm-6.5.1-r1: Backported patch just added to correct upstream ↵Nicolas Bock2013-09-112-44/+15
| | | | | | | | | | | | | | | | | | version. Package-Manager: portage-2.2.2
| | * sys-cluster/charm-6.5.1-r1: Added patch from ticket 294.Nicolas Bock2013-09-113-0/+88
| | | | | | | | | | | | Package-Manager: portage-2.2.2
| | * Version bump to sys-cluster/charm-6.5.1-r1 to push CkMigrationMgr patch to ↵Nicolas Bock2013-09-113-1/+201
| | | | | | | | | | | | | | | | | | users. Package-Manager: portage-2.2.1
| | * Added patch to fix bug in CkReductionMgr::reduceMessages().Nicolas Bock2013-09-113-0/+40
| | | | | | | | | | | | | | | | | | This issues has been reported upstream (issue #287). Package-Manager: portage-2.2.1
| | * Merge pull request #80 from gerddie/masterSébastien Fabbro2013-09-104-0/+205
| | |\ | | | | | | | | Add sci-libs/itk Closes: #124241 - merging will need work.
| | | * update the dependencies and handling of missing variblesGert Wollny2013-06-152-24/+37
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | After some more inspection of the build system it turns out that now hdf5 is always required, so I removed the useflag and made the dependency obligarory. In addition, I changed the handling when the environment variables are not set i.e. only if python bindings are requested and only for the *DIMS variable the ebuold will bail out, for the memory size the default fallback "1" will be used if it is not set. I also added the sse2 use flag since VNL can profit from it.
| | | * change digestsGert Wollny2013-06-121-3/+0
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| | | * replace maintainer lineGert Wollny2013-06-121-1/+1
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| | | * replace eerror by elog, and correct indetionGert Wollny2013-06-121-14/+14
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| | | * remove superfluos line in the patchGert Wollny2013-06-121-1/+0
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| | | * correct use flag helpGert Wollny2013-06-122-3/+3
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| | | * use cmake-utils also for itkv3compatGert Wollny2013-06-122-5/+2
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| | | * remove obsolete check for environment variablesGert Wollny2013-06-122-7/+1
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| | | * correct more indentionsGert Wollny2013-06-122-8/+7
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| | | * Further cleaup the ebuild:Gert Wollny2013-06-123-34/+16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | - correct indentions - remove patented use flag since it is an unused leftover from the itk-3.X times - remove some out-commented lines
| | | * Add a pkg_pretent section to force the user to set certain variables in ↵Gert Wollny2013-06-122-7/+42
| | | | | | | | | | | | | | | | | | | | | | | | | | | | make.conf Specifically, ITK_COMPUTER_MEMORY_SIZE must always be set and ITK_WRAP_DIMS must be set when python bindings are enabled.
| | | * correct dash character and fftw slotGert Wollny2013-06-111-2/+2
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