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* bump to paraview 3.8.1François Bissey2010-10-274-13/+23
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* Package.masking vtk-5.6.1François Bissey2010-10-271-3/+3
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* Import new vtk-5.6.1 in the overlay. package asked a there are no stable ↵François Bissey2010-10-279-0/+782
| | | | | | version. (Portage version: 2.2.0_alpha1/git/Linux i686, unsigned Manifest commit)
* [sys-cluster/pacemaker-gui] proposed ebuildUltrabug2010-10-268-0/+241
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* [sys-cluster/pacemaker] proposed version bumpUltrabug2010-10-265-0/+145
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* glusterfs bump to better handle glusterd and gluster CLIUltrabug2010-10-2610-0/+403
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* [sci-chemistry/gromacs] added natural vmd support (bug #340651#c8)Christoph Junghans2010-10-255-12/+19
| | | | | (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
* [sci-libs/dcmtk] Version bumpKacper Kowalik (Xarthisius)2010-10-254-2/+143
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* Keyworded for ~-linux prefixJustin Lecher2010-10-243-3/+16
| | | | (Portage version: 2.2.0_alpha1/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* Merge branch 'master' of ssh://bes.ibi.kfa-juelich.de/opt/scisoft64/data/sciJustin Lecher2010-10-241-0/+4
|\ | | | | | | | | * 'master' of ssh://bes.ibi.kfa-juelich.de/opt/scisoft64/data/sci: Added all files
| * Added all filesJustin Lecher (jlec)2010-10-242-1/+5
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* | openmp fixJustin Lecher2010-10-242-15/+1
| | | | | | | | (Portage version: 2.2_rc97/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* | Added missing ManifestJustin Lecher2010-10-241-0/+14
| | | | | | | | (Portage version: 2.2.0_alpha1/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* | Merge ssh://bes.ibi.kfa-juelich.de/opt/scisoft64/data/sci into HEADJustin Lecher2010-10-241-14/+0
|\| | | | | | | | | * ssh://bes.ibi.kfa-juelich.de/opt/scisoft64/data/sci: Keyworded for *-linux (Portage version: 2.2.00.15842-prefix/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
| * Merge branch 'master' of git://git.overlays.gentoo.org/proj/sciJustin Lecher (jlec)2010-10-24118-437/+3514
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * 'master' of git://git.overlays.gentoo.org/proj/sci: (33 commits) InCvs [sci-chemistry/molsketch] tiny changes regarding style of metadata.xml and ebuild - thanks to Justin Lecher (jlec) for giving a hint reworked passing configure options to petsc config script [sci-chemistry/molsketch] initial import of version 0.2.0; thanks a lot to Kacper Kowalik (Xarthisius) for direction to a proper ebuild. [sci-chemistry/gromacs] multilib fix (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) [sci-chemistry/gromacs] added vmd use flag (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) sci-mathematics/normaliz QA (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) Version Bump Cleanup and gcc44 patch added, thanks Joel Berendzen [sci-mathematics/singular] Added symlink needed by prefixed Sage (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit) 4ti2 moved to the main tree bumped to 0.5.2, ebuild by Andrzej Krentosz in bug 266249 (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) sci-mathematics/netgen: Removed old version sci-mathematics/netgen: Version bump sci-mathematics/frama-c: various EAPI3 cleanups sci-chemistry/gabedit: Version bump. Thanks to maxb <max-braeu@gmx.de>. Drop old. [sci-chemistry/gromacs] renamed manual distfile (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) sci-mathematics/singular: backport fix for bug 341357 sci-mathematics/lrslib: QA fixes (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit) Fixing dependencies of sci-mathematics/Macaulay2 (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit) ...
| * \ Merge branch 'master' of git://git.overlays.gentoo.org/proj/sciJustin Lecher (jlec)2010-10-1336-402/+410
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * 'master' of git://git.overlays.gentoo.org/proj/sci: [sci-mathematics/singular] Added ~x86-linux keyword and Prefix patch (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit) now in main tree Fixing boost dependency and moved to qt4-r2 eclass in paraview sci-math/Macaulay2-1.4 fixed SRC_URI and small updates added a proposal of agenda for the first sci-electronics meeting [sys-cluster/ceph] Add initscripts from bug #338008 Removing package.mask for sci-mathematics/axiom. Bug 336789 resolved by bump and unkeywording Bump: sci-mathematics/axiom-201009 Macaulay2-1.4_pre SVN from 1.4 branch Prefix Fixes nmrpipe update dev-python/numpydoc: Bump
| * \ \ Merge branch 'master' of git://git.overlays.gentoo.org/proj/sciJustin Lecher (jlec)2010-10-086-23/+14
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * 'master' of git://git.overlays.gentoo.org/proj/sci: Another prefix fix sci-mathematics/frama-c: fixes Manifest sci-mathematics/frama-c/frama-c-20100401.ebuild: EAPI3 typos [app-doc/gromacs-manual]: fixed install location (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit)
| * \ \ \ Merge branch 'master' of git://git.overlays.gentoo.org/proj/sciJustin Lecher (jlec)2010-10-0784-1173/+1287
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * 'master' of git://git.overlays.gentoo.org/proj/sci: (36 commits) coot openmp Version Bump Openmp linking patch Bump jgraphx to 1.4.1.2 petsc-3.1-p5: appending fortran configure flags dependent on fortran use-flag fixed digest added petsc ebuild of latest patchset sci-mathematics/frama-c: EAPI3 cleanups Update ceph. init scripts will come soon [sci-libs/openmm] initial commit (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) [sci-libs/openmm] masked updated use.local.desc [sci-chemistry/votca-csg] fixed bootstrap for live ebuild (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) ucsf license added New addition unio license added [dev-tex/revtex] Moved to main tree [dev-tex/natbib] Moved to main tree [sci-chemistry/votca-csg] added live ebuild (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) [sci-chemistry/votca-csg] version bump (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) ...
| * \ \ \ \ Merge branch 'master' of git://git.overlays.gentoo.org/proj/sciJustin Lecher (jlec)2010-09-2487-1388/+543
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * 'master' of git://git.overlays.gentoo.org/proj/sci: (26 commits) [sci-electronics/gspiceui] Moved to main tree. coot: Fix build error and MTZ-opening crash. [sci-chemistry/gromacs] updated manifest (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) [sci-electronics/klayout] Moving to tree sci-math/Macaulay2-9999 fixed [sci-electronics/magic] Prepare moving this back to the tree. virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction virtual/glut -> media-libs/freeglut & virtual/glu -> virtual/opengl Correction Better and more complete fix for parallel make in singular ...
| * \ \ \ \ \ Merge branch 'master' of git://git.overlays.gentoo.org/proj/sciJustin Lecher (jlec)2010-09-1640-685/+521
| |\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * 'master' of git://git.overlays.gentoo.org/proj/sci: Minor prefix corrections [sci-libs/clapack] Was bumped to tree by bicatali. [sci-libs/pfft] added --disable-la-files option (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) Remove lam-mpi. [dev-tex/natbib] Fixed description, made myself maintainer, and removed RESTRICT. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit) [sci-libs/clapack] Switch to cmake-based build system. Create install target and cmake export file. Build and run tests conditionally. Use f2c symbol prefix. (Portage version: 2.1.8.3/git/Linux x86_64) (Signed Manifest commit) fix repoman warnings Disable support for gforker as it breaks debug builds and is being abandonded upstream, see http://trac.mcs.anl.gov/projects/mpich2/ticket/898. Due to pvfs2 upstream continuously lagging behind the kernel the useflag is being dropped. Fix for petsc and adding license New package: sci-mathematics/petsc Ebuild due to J. M. Gottfried Corresponding Bug: 53386 (Meeh... that's from 2004!) Respect LDFLAGS, #335590. Fix metadata. Respect LDFLAGS #336969.
| * \ \ \ \ \ \ mergeJustin Lecher (jlec)2010-09-13247-3096/+4284
| |\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci * 'master' of git://git.overlays.gentoo.org/proj/sci: (95 commits) Some scripts are in the wrong place [sci-libs/fftw] added static-libs useflag (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) [sci-libs/pfft] added static-libs useflag (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) [sci-libs/nfft] initial commit (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) [sci-libs/pfft]: initial commit (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) [sci-libs/fftw] Added alpha version to test mpi interface (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) [dev-tex/revtex] Upstream bumped the patch level without renaming the file... (Portage version: 2.1.8.3/git/Linux i686) (Unsigned Manifest commit) mpir version bump Local bump of sci-mathematics/axiom-201005 Version Bump Moved to the tree. See bug #79082. [dev-vcs/mercurial-server] updated elog messages (Portage version: 2.1.8.3/git/Linux i686) (Signed Manifest commit) sci-mathematics/normaliz bump to 2.5 Add missing factory headers for libsingular. Imort all my fixes to singular from the sage-on-gentoo overlay. Import Christopher's version of factory migrated to the autotools-utils eclass from the sage-on-gentoo overlay. Version Bump Fixed patch sci-geosciences/swmm: Version bump. Version bump. ... Conflicts: sci-chemistry/dssp2pdb/Manifest
| * | | | | | | | Keyworded for *-linuxJustin Lecher (jlec)2010-07-262-12/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (Portage version: 2.2.00.15842-prefix/git/Linux x86_64, RepoMan options: --force) (Unsigned Manifest commit)
* | | | | | | | | Real OPENMP fixJustin Lecher2010-10-245-9/+87
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (Portage version: 2.2.0_alpha1/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* | | | | | | | | Sip patch from bgoJustin Lecher2010-10-243-15/+50
| |_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | (Portage version: 2.2_rc97/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* | | | | | | | InCvsJustin Lecher2010-10-236-102/+0
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* | | | | | | | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciMaximilian Bräutigam2010-10-225-31/+45
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| * | | | | | | | reworked passing configure options to petsc config scriptJens-Malte Gottfried2010-10-223-26/+40
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| * | | | | | | | [sci-chemistry/gromacs] multilib fixChristoph Junghans2010-10-222-5/+5
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* | | | | | | | | [sci-chemistry/molsketch] tiny changes regarding style of metadata.xml and ↵Maximilian Bräutigam2010-10-223-9/+11
|/ / / / / / / / | | | | | | | | | | | | | | | | | | | | | | | | ebuild - thanks to Justin Lecher (jlec) for giving a hint
* | | | | | | | [sci-chemistry/molsketch] initial import of version 0.2.0; thanks a lot to ↵Maximilian Bräutigam2010-10-224-0/+56
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Kacper Kowalik (Xarthisius) for direction to a proper ebuild.
* | | | | | | | [sci-chemistry/gromacs] added vmd use flagChristoph Junghans2010-10-214-7/+16
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* | | | | | | | sci-mathematics/normaliz QAThomas Kahle2010-10-214-1/+114
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* | | | | | | | Version BumpJustin Lecher2010-10-203-10/+13
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* | | | | | | | Cleanup and gcc44 patch added, thanks Joel BerendzenJustin Lecher2010-10-208-77/+243
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (Portage version: 2.2_rc98/git/Linux x86_64, signed Manifest commit with key 70EB7916)
* | | | | | | | [sci-mathematics/singular] Added symlink needed by prefixed SageChristopher Schwan2010-10-202-1/+4
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* | | | | | | | 4ti2 moved to the main treeThomas Kahle2010-10-194-56/+0
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* | | | | | | | bumped to 0.5.2, ebuild by Andrzej Krentosz in bug 266249Thomas Kahle2010-10-196-1/+160
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* | | | | | | | sci-mathematics/netgen: Removed old versionroot2010-10-193-80/+5
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* | | | | | | | sci-mathematics/netgen: Version bumproot2010-10-193-2/+86
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* | | | | | | | sci-mathematics/frama-c: various EAPI3 cleanupsJonathan-Christofer Demay2010-10-194-4/+4
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* | | | | | | | sci-chemistry/gabedit: Version bump. Thanks to maxb <max-braeu@gmx.de>. Drop ↵Kacper Kowalik (Xarthisius)2010-10-195-84/+44
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* | | | | | | | [sci-chemistry/gromacs] renamed manual distfileChristoph Junghans2010-10-174-11/+15
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* | | | | | | | sci-mathematics/singular: backport fix for bug 341357Kacper Kowalik (Xarthisius)2010-10-174-3/+9
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* | | | | | | | sci-mathematics/lrslib: QA fixesThomas Kahle2010-10-163-5/+11
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* | | | | | | | Fixing dependencies of sci-mathematics/Macaulay2Thomas Kahle2010-10-164-5/+11
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* | | | | | | | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciSébastien Fabbro2010-10-163-16/+22
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| * | | | | | | | Updated ebuild for cephAlexey Shvetsov2010-10-163-16/+22
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* | | | | | | | | Initial importSébastien Fabbro2010-10-165-0/+117
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* | | | | | | | | sci-mathematics/rngstreams: Initial importSébastien Fabbro2010-10-164-0/+74
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* | | | | | | | | sci-mathematics/prng: Initial importSébastien Fabbro2010-10-165-0/+132
|/ / / / / / / / | | | | | | | | | | | | | | | | | | | | | | | | (Portage version: 2.2_rc96/git/Linux x86_64, signed Manifest commit with key 0x13CB1360)