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* sci-libs/gmsh: version bump to 4.0.2Matthias Maier2018-10-102-0/+94
| | | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org> Package-Manager: Portage-2.3.50, Repoman-2.3.11
* dev-cpp/kokkos: initial commitChristoph Junghans2018-10-043-0/+56
| | | | | Package-Manager: Portage-2.3.49, Repoman-2.3.10 Signed-off-by: Christoph Junghans <ottxor@gentoo.org>
* sci-libs/libxc: moved to gx86Christoph Junghans2018-10-025-202/+0
| | | | Signed-off-by: Christoph Junghans <ottxor@gentoo.org>
* sci-mathematics/slepc: version bump to 3.10.0Matthias Maier2018-10-012-2/+2
| | | | Package-Manager: Portage-2.3.49, Repoman-2.3.10
* sci-libs/nipype: corrected depHorea Christian2018-09-261-0/+1
| | | | Package-Manager: Portage-2.3.49, Repoman-2.3.10
* sci-visualization/surf-ice: updated live ebuildHorea Christian2018-09-241-2/+5
| | | | Package-Manager: Portage-2.3.49, Repoman-2.3.10
* sci-visualization/surf-ice: version bumpHorea Christian2018-09-242-0/+46
| | | | Package-Manager: Portage-2.3.49, Repoman-2.3.10
* sci-visualization/mricrogl: updated live ebuildHorea Christian2018-09-241-2/+5
| | | | Package-Manager: Portage-2.3.49, Repoman-2.3.10
* sci-visualization/mricrogl: version bumpHorea Christian2018-09-242-0/+45
| | | | Package-Manager: Portage-2.3.49, Repoman-2.3.10
* sci-mathematics/petsc: version bump to 3.10.0Matthias Maier2018-09-172-0/+197
| | | | Package-Manager: Portage-2.3.49, Repoman-2.3.10
* sci-mathematics/petsc: drop old 3.9*Matthias Maier2018-09-173-394/+0
| | | | Package-Manager: Portage-2.3.49, Repoman-2.3.10
* sci-mathematics/petsc: version bump to 3.9.4Matthias Maier2018-09-172-0/+197
| | | | Package-Manager: Portage-2.3.49, Repoman-2.3.10
* sci-biology/abyss: version bumpMartin Mokrejs2018-09-113-0/+73
| | | | | | | | An improved version with sealer using OpenMP+OpenMPI now. https://github.com/bcgsc/abyss/releases/tag/2.1.1 Package-Manager: Portage-2.3.48, Repoman-2.3.10
* sci-biology/genometools: remove commentMartin Mokrejs2018-09-111-1/+0
| | | | Package-Manager: Portage-2.3.48, Repoman-2.3.10
* sci-biology/genometools: add missing dependency on dev-lua/lua-md5Martin Mokrejs2018-09-111-1/+2
| | | | Package-Manager: Portage-2.3.48, Repoman-2.3.10
* dev-lua/lua-md5: new package needed by sci-biology/genometoolsMartin Mokrejs2018-09-114-0/+53
| | | | | | I am not interested in maintaining this any further. Package-Manager: Portage-2.3.48, Repoman-2.3.10
* sys-cluster/openmpi: dep on v1 hwlocJustin Bronder2018-09-115-5/+5
| | | | Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-biology/amos: adjust to SLOTed jellyfish and drop qt4Martin Mokrejs2018-09-113-13/+71
| | | | | | | | | | | | | | | | | Jellyfish resides in ${EPREFIX}/usr/include/jellyfish1/ now. The package needed qt4 with qt3support enabled to compile hawkeye utility. Let's try with qt5 core only. Also enabling compilation of all utilities if they pass configure checks. Currently, jellyfish linking fails with some cxx linking error, maybe my -lm or -lpthreads needs to be recompiled with gcc-8.2.0 too? Also, boot is somehow not picked up. Bug: https://bugs.gentoo.org/show_bug.cgi?id=663110 Package-Manager: Portage-2.3.48, Repoman-2.3.10
* sci-biology/jellyfish: remove doubled econf callMartin Mokrejs2018-09-115-5/+5
| | | | Package-Manager: Portage-2.3.48, Repoman-2.3.10
* sci-biology/ngsview: drop an outdated package requiring qt3Martin Mokrejs2018-09-103-50/+0
| | | | | | | | | | | The was masked out and was written for qt3. It is unclear if it would compile using newer qmake. Also, sys-libs/db-4.3:*[cxx] dependency would have to be improved and inlcude and libdir paths would need to be inserted into the Makefiles. Removing. Bug: https://bugs.gentoo.org/663110
* sci-biology/ngsview: document last ebuildMartin Mokrejs2018-09-102-8/+9
| | | | Package-Manager: Portage-2.3.48, Repoman-2.3.10
* sci-biology/ugene: drop old versions.Benda Xu2018-09-103-70/+0
| | | | | Bug: https://bugs.gentoo.org/663110 Package-Manager: Portage-2.3.48, Repoman-2.3.10
* media-gfx/librecad: Newver version in treeAlexey Shvetsov2018-09-067-268/+0
| | | | Package-Manager: Portage-2.3.47, Repoman-2.3.10
* sci-libs/spams-python: added test suiteHorea Christian2018-09-051-0/+4
| | | | Package-Manager: Portage-2.3.48, Repoman-2.3.10
* sci-libs/spams-python: new packageHorea Christian2018-09-043-0/+80
| | | | Package-Manager: Portage-2.3.48, Repoman-2.3.10
* sci-libs/trilinos: fix compilation with superlu 5Matthias Maier2018-08-312-0/+162
| | | | Package-Manager: Portage-2.3.48, Repoman-2.3.10
* sci-mathematics/petsc: version bump to 3.9.3Matthias Maier2018-08-302-0/+197
| | | | Package-Manager: Portage-2.3.48, Repoman-2.3.10
* sci-mathematics/petsc: remove obsolete patchesMatthias Maier2018-08-306-273/+0
| | | | Package-Manager: Portage-2.3.48, Repoman-2.3.10
* sci-mathematics/petsc: drop oldMatthias Maier2018-08-302-197/+0
| | | | Package-Manager: Portage-2.3.48, Repoman-2.3.10
* eclass/intel-sdp-r1: Add path_exists workaroundMatthias Maier2018-08-301-7/+41
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* dev-python/pynrrd: EAPI and PYTHON_COMPAT bumpHorea Christian2018-08-291-2/+2
| | | | Package-Manager: Portage-2.3.45, Repoman-2.3.10
* sys-cluster/openmpi: bump 3.1.2Justin Bronder2018-08-272-1/+1
| | | | Package-Manager: Portage-2.3.40, Repoman-2.3.9
* No longer separately downloading installed filesHorea Christian2018-08-201-3/+2
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* sys-cluster/openmpi: bump 2.1.5Justin Bronder2018-08-202-1/+1
| | | | Package-Manager: Portage-2.3.40, Repoman-2.3.9
* corrected pathHorea Christian2018-08-201-0/+0
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* Distributing LAPACK migration files alongside overlayHorea Christian2018-08-203-2/+42
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* BLAS/LAPACK migration instructionsHorea Christian2018-08-171-0/+12
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* TypoHorea Christian2018-08-161-1/+1
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* Formatting improvements and install instructionsHorea Christian2018-08-141-6/+27
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* sys-cluster/openmpi: bump 2.1.4Justin Bronder2018-08-132-1/+1
| | | | Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-libs/nipype: added testing depHorea Christian2018-08-113-1/+4
| | | | Package-Manager: Portage-2.3.45, Repoman-2.3.10
* sci-libs/nipype: version bumpHorea Christian2018-08-102-0/+54
| | | | Package-Manager: Portage-2.3.45, Repoman-2.3.10
* sci-libs/nipype: version bumpHorea Christian2018-08-092-0/+54
| | | | Package-Manager: Portage-2.3.44, Repoman-2.3.10
* sci-libs/nipype: EAPI and PYTHON_COMPAT bumpHorea Christian2018-08-091-3/+3
| | | | Package-Manager: Portage-2.3.44, Repoman-2.3.10
* Style improvements and better links.Horea Christian2018-08-031-8/+5
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* sci-biology/nilearn: fixed testsHorea Christian2018-08-024-6/+51
| | | | Package-Manager: Portage-2.3.44, Repoman-2.3.10
* sci-biology/nilearn: version bumpHorea Christian2018-08-022-0/+52
| | | | Package-Manager: Portage-2.3.44, Repoman-2.3.10
* sci-biology/nilearn: EAPI and PYTHON_COMPAT bumpHorea Christian2018-08-022-4/+4
| | | | Package-Manager: Portage-2.3.44, Repoman-2.3.10
* sci-libs/pybids: EAPI and PYTHON_COMPAT bumpHorea Christian2018-08-021-2/+2
| | | | Package-Manager: Portage-2.3.44, Repoman-2.3.10
* dev-python/grabbit: EAPI and PYTHON_COMPAT bumpHorea Christian2018-08-021-2/+2
| | | | Package-Manager: Portage-2.3.44, Repoman-2.3.10