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| * Update chimera to new versionAlexey Shvetsov2014-06-273-1/+101
| | | | | | | | Package-Manager: portage-2.2.10
| * sci-biology/prot4EST: remove version numbers from the installed binary filenameMartin Mokrejš2014-06-271-0/+1
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| * sci-biology/BamView: fixed java depsMartin Mokrejš2014-06-271-2/+3
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| * sci-biology/VelevtOptimiser: dropping perl version requirement as I am ↵Martin Mokrejš2014-06-271-1/+1
| | | | | | | | unbale to check for >=5.8 but make sure 5.16 evaluates as True
| * sci-biology/ncbi-tools++-12.0.0: improved comment textMartin Mokrejš2014-06-261-1/+4
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| * sci-biology/ncbi-tools++: so require media-libs/mesa[osmesa] for USE=mesaMartin Mokrejš2014-06-263-3/+3
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| * sci-biology/ncbi-tools++: reworked patchMartin Mokrejš2014-06-261-6/+6
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| * sci-biology/ncbi-tools++: bring back USE=mesa although it is about OSMesaMartin Mokrejš2014-06-263-11/+9
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| * sci-biology/ncbi-tools++: fix 'make install if USE=pchMartin Mokrejš2014-06-262-0/+12
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| * sci-biology/ncbi-tools++: dropped USE=ftds as it is useless and recommended ↵Martin Mokrejš2014-06-263-24/+17
| | | | | | | | by upstream to be disabled altogether
| * sci-biology/ncbi-tools++-12.0.0: drop forgotten IUSE=sslMartin Mokrejš2014-06-261-1/+1
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| * sci-biology/ncbi-tools++-12.0.0: added a blocker with sci-biology/sra_sdkMartin Mokrejš2014-06-261-0/+1
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| * sci-biology/ncbi-tools++-12.0.0: more places where to drop ':%=%'Martin Mokrejš2014-06-261-1/+1
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| * sci-biology/ncbi-tools++-12.0.0: more entries to ↵Martin Mokrejš2014-06-261-0/+22
| | | | | | | | ncbi-tools++-12.0.0-drop-STATIC-from-LIB.patch
| * sci-biology/ncbi-tools++-12.0.0: added the patch istelf dropping :%=% from ↵Martin Mokrejš2014-06-261-0/+22
| | | | | | | | LIB settings
| * sci-biology/ncbi-tools++-12.0.0: dropping :%=% from LIB settingsMartin Mokrejš2014-06-261-0/+1
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| * sci-biology/ncbi-tools++-9.0.0*: dropped altogether openssl-related USE ↵Martin Mokrejš2014-06-262-13/+5
| | | | | | | | flags and configure arguments (per upstream info nothing in the public code uses openssl and the configure test is there for their internal reasonings); dropped gnutls[lzo] requirement which was only need for unpatched 9.0.0 version; however, --with-lzo is still advantageous for http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/group__Compression.htmlhttp://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/group__CompressionStreams.html
| * sci-biology/ncbi-tools++-12.0.0: dropped altogether openssl-related USE ↵Martin Mokrejš2014-06-261-3/+1
| | | | | | | | flags and configure arguments (per upstream info nothing in the public code uses openssl and the configure test is there for their internal reasonings); dropped gnutls[lzo] requirement which was only need for unpatched 9.0.0 version; however, --with-lzo is still advantageous for http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/group__Compression.htmlhttp://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/group__CompressionStreams.html
| * sci-biology/barrnap: working ebuild although installing a pre-compiled ↵Martin Mokrejš2014-06-262-0/+33
| | | | | | | | | | | | binary and until somebody hacks teh main perl code it need to be installed into /usr/share/{PN} and modifies PATH accordingly Package-Manager: portage-2.2.7
| * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciMartin Mokrejš2014-06-264-7/+8
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| * | sci-biology/ncbi-tools++-12.0.0: cleanup comments and shutdown a false alarm ↵Martin Mokrejš2014-06-261-2/+1
| | | | | | | | | | | | message from mv
* | | sci-libs/armadillo: version bump to 4.300.9Jauhien Piatlicki2014-06-284-3/+121
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* | add flint dependencyThomas Kahle2014-06-262-0/+4
| | | | | | | | Package-Manager: portage-2.2.8-r1
* | live ebuild updateChristoph Junghans2014-06-252-7/+4
|/ | | | Package-Manager: portage-2.2.8-r1
* sci-biology/ncbi-tools++-12.0.0: dropped unneeded patchMartin Mokrejš2014-06-261-1660/+0
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* sci-biology/ncbi-tools++-12.0.0: dropped unneeded patches, added direct ↵Martin Mokrejš2014-06-263-67/+2
| | | | dependency on glew because the dependency on virtual/opengl does not work
* sci-biology/ncbi-tools++-12.0.0: re-added update patch to configure so that ↵Martin Mokrejš2014-06-252-44264/+67
| | | | we can avoid eautoconf until there is autoconf-2.59 system-wide
* sci-biology/ncbi-tools++-12.0.0: install colliding files under a name ↵Martin Mokrejš2014-06-251-2/+6
| | | | suffixed by a plus sign
* sci-biology/ncbi-tools++-12.0.0: first compile-able ebuild, wow, huge thanks ↵Martin Mokrejš2014-06-254-6/+444
| | | | to Aaron Ucko from NCBI developers on the cpp@ mailing list
* more changes to get ncbi-tools++-12.0.0 compiledMartin Mokrejš2014-06-256-1448/+1968
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* sci-biology/prot4EST: new package, missing LICENSE, missing dev-perl/ depsMartin Mokrejš2014-06-242-0/+16
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* sci-biology/prot4EST: new package, missing LICENSE, missing dev-perl/ depsMartin Mokrejš2014-06-242-0/+38
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* dropped the duplicate part from the patchMartin Mokrejš2014-06-231-1660/+0
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* add an extra patch for configure until we find a way to ensure user has ↵Martin Mokrejš2014-06-232-6/+46083
| | | | autoconf-2.59 or for ncbi-tools++-12.0.0 may have autoconf-2.60
* updating the ChangeLog to note where the ↵Martin Mokrejš2014-06-231-1/+8
| | | | ncbi-tools++-12.0.0-support-autoconf-2.60.patch comes from
* add patches for 12.0.0 to support autoconf-2.60 (so far 2.59 was needed)Martin Mokrejš2014-06-232-3/+1667
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* multiple move to EAPI=5 and regression fixesJonathan-Christofer Demay2014-06-2251-274/+241
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* fix pkg_setup regressionJonathan-Christofer Demay2014-06-222-5/+18
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* zarith no longer asks ocamlc for libdirJonathan-Christofer Demay2014-06-222-12/+14
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* multiple version bumpsJonathan-Christofer Demay2014-06-2270-839/+1087
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* added missing deps (bug #514084)Christoph Junghans2014-06-212-0/+4
| | | | Package-Manager: portage-2.2.8-r1
* sci-biology/sgp2: new package, worksMartin Mokrejš2014-06-175-0/+141
| | | | Package-Manager: portage-2.2.7
* sci-biology/geneid: new package, worksMartin Mokrejš2014-06-175-0/+62
| | | | Package-Manager: portage-2.2.7
* sci-mathematics/alt-ergo: fix bug #479994: move sources to my dev spaceJauhien Piatlicki2014-06-163-4/+11
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* Merge pull request #232 from JelteF/neovimJustin2014-06-142-1/+10
|\ | | | | Use CFLAGS needed to get a working executable for neovim
| * Use CFLAGS needed to get a working executableJelte Fennema2014-06-142-1/+10
| | | | | | | | Package-Manager: portage-2.2.10
* | Merge pull request #231 from TheChymera/nipypeJustin2014-06-141-1/+2
|\ \ | |/ |/| Added vital dep for sci-libs/nipype
| * Added vital depHorea Christian2014-06-111-1/+2
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* | sci-chemistry/openbabel-python: Update PYTHON_COMPATReinis Danne2014-06-112-1/+4
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* | Update live ebuildThomas Kahle2014-06-113-10/+12
|/ | | | Package-Manager: portage-2.2.8-r1