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* app-doc/root-docs: backport fixes from ROOT-6 branchAndrew Savchenko2014-07-064-0/+190
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* sci-physics/root: Backport fixes from ROOT-6 branchAndrew Savchenko2014-07-068-0/+702
| | | | | Backport fixes for .credits, .demos, .license from ROOT-6 branch. A patch was backported by upstream too.
* sci-physics/root: rectify license listAndrew Savchenko2014-07-064-3/+7
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* root and root-docs: version bumpAndrew Savchenko2014-07-068-1/+486
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* sci-biology/MaSuRCA: add dependency on sci-biology/quorumMartin Mokrejš2014-07-041-1/+2
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* sci-biology/clview: add dependency on =x11-libs/fox-1.6*Martin Mokrejš2014-07-043-3/+9
| | | | Package-Manager: portage-2.2.7
* sci-biology/caftools: clarified package descriptionMartin Mokrejš2014-07-042-3/+6
| | | | Package-Manager: portage-2.2.7
* sci-biology/emboss-6.3.1_p4-r2: added a patch for 'undefined reference to ↵Martin Mokrejš2014-07-043-0/+20
| | | | | | c_plwid' bug #493724 Package-Manager: portage-2.2.7
* sci-biology/Atlas-Link: noted dependence, see bug #516366Martin Mokrejš2014-07-044-0/+46
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* sci-biology/gap2caf: remove -rpath-link from src/MakefileMartin Mokrejš2014-07-042-2/+6
| | | | Package-Manager: portage-2.2.7
* Nnot available anymoreJustin Lecher2014-07-044-64/+0
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-chemistry/hydronmr: Fix emul-linux deps for modern multilibJustin Lecher2014-07-042-3/+3
| | | | Package-Manager: portage-2.2.10
* sci-chemistry/nmrpipe: Fix emul-linux deps for modern multilibJustin Lecher2014-07-042-6/+14
| | | | | Package-Manager: portage-2.2.10 RepoMan-Options: --force
* sci-chemistry/unio: Fix emul-linux deps for modern multilibJustin Lecher2014-07-042-3/+6
| | | | | Package-Manager: portage-2.2.10 RepoMan-Options: --force
* sci-libs/fftw: Drop reference to app-emulation/emul-linux-x86-soundlibsJustin Lecher2014-07-042-4/+4
| | | | Package-Manager: portage-2.2.10
* More prefix fixes, add missing depSébastien Fabbro2014-07-032-9/+11
| | | | Package-Manager: portage-2.2.10.1-prefix
* Merge branch 'master' of git://git.overlays.gentoo.org/proj/sciSébastien Fabbro2014-07-0324-130/+339
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| * sci-physcis/root-9999: patch moved to upstreamAndrew Savchenko2014-07-032-2/+4
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| * sci-chemistry/cpmgfit: New package written by meJustin Lecher2014-07-034-0/+65
| | | | | | | | | | Package-Manager: portage-2.2.10 RepoMan-Options: --force
| * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciMartin Mokrejš2014-07-032-0/+4
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| | * use ninjaChristoph Junghans2014-07-022-0/+4
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| * | sci-biology/jellyfish: new package, worksMartin Mokrejš2014-07-034-0/+38
| |/ | | | | | | Package-Manager: portage-2.2.7
| * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciMartin Mokrejš2014-07-0319-34/+607
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| | * sci-physics/root: fix aux docs installationAndrew Savchenko2014-07-034-3/+26
| | | | | | | | | | | | | | | Do not compress files required for .credits, .demo, .license commands. Fix tutorials patch.
| | * Merge remote-tracking branch 'github/master'François Bissey2014-07-031-0/+1
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| | * | More fix for macos. We need to create the link for both linux and macos.François Bissey2014-07-032-1/+5
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.10
| * | | sci-biology/tablet-bin: version bump; updated the licenseMartin Mokrejš2014-07-033-0/+104
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.7
| * | | sci-biology/tablet: cleaned up the ebuilds, they compile and install but the ↵Martin Mokrejš2014-07-035-127/+96
| | | | | | | | | | | | | | | | | | | | | | | | bundled samtools-*.jar is not found; updated the license Package-Manager: portage-2.2.7
* | | | Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; ↵Sébastien Fabbro2014-07-021-0/+1
|\ \ \ \ | |_|/ / |/| | / | | |/ | |/| github.com:gentoo-science/sci
| * | Merge pull request #235 from gentryx/masterSébastien Fabbro2014-07-021-0/+1
| |\ \ | | | | | | | | added lib path for VisIt's libsim and friends
| | * | added lib path for VisIt's libsim and friendsAndreas Schäfer2014-07-021-0/+1
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* | | | sci-physics/root: fix ROOT's CLI commandsAndrew Savchenko2014-07-023-1/+40
| | | | | | | | | | | | | | | | | | | | Arrange changes required for .credits, .demos and .license to work properly.
* | | | app-doc/root-docs: properly generate gif imagesAndrew Savchenko2014-07-025-22/+15
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* | | | sci-physics/root: fix Cling library loadAndrew Savchenko2014-07-024-9/+461
|/ / / | | | | | | | | | | | | It was broken for prefix builds (that's how ROOT is installed in Gentoo. See bug https://sft.its.cern.ch/jira/browse/ROOT-6410.
* | | Merge remote-tracking branch 'gentoo/master' into upstream-masterJauhien Piatlicki2014-07-022-2/+6
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| * | Tested on x64-macos, keywording.François Bissey2014-07-022-2/+6
| |/ | | | | | | Package-Manager: portage-2.2.10
* | Merge pull request #234 from aufau/pynomoJustin2014-07-014-0/+57
|\ \ | |/ |/| dev-python/pynomo: New package for bug #515682
| * dev-python/pynomo: New package for bug #515682Witold Pilat2014-07-014-0/+57
|/ | | | Package-Manager: portage-2.2.10
* Merge branch 'jonasstein-master'Justin Lecher2014-07-013-0/+52
|\ | | | | | | | | * jonasstein-master: add Clip4, the Cologne Laue Indexiation Program
| * add Clip4, the Cologne Laue Indexiation ProgramJonas Stein2014-06-303-0/+52
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* | Tweak src_install for OS X support. Added documentation in the ebuild itself.François Bissey2014-07-012-1/+7
|/ | | | Package-Manager: portage-2.2.10
* sci-chemistry/coot: Fix sandbox violationJustin Lecher2014-06-303-1/+28
| | | | Package-Manager: portage-2.2.10
* app-doc/root-docs: fix unpack stage for non-live versionsAndrew Savchenko2014-06-301-0/+2
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* sci-mathematics/scilab: support jdk1.8Guillaume Horel2014-06-293-1/+82
| | | | Package-Manager: portage-2.2.10
* sci-physics/root, app-doc/root-docs: version bump to ROOT-6Andrew Savchenko2014-06-2928-923/+1020
| | | | | This is a major version bump for ROOT-6. Please refer to package's ChangeLog files for details. Testing is welcome.
* Merge remote-tracking branch 'gentoo/master' into upstream-masterJauhien Piatlicki2014-06-2829-83/+6516
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| * Added forgotten patch files for sci-libs/bigdft-abi. ↵Honza Macháček2014-06-276-0/+5810
| | | | | | | | bigdft-abi-1.0.4-0005.patch too big for repoman's taste.
| * Version bumped to 7.6.4. ScaLAPACK support, and use of the MPI ↵Honza Macháček2014-06-274-5/+416
| | | | | | | | | | | | implementation of sci-libs/fftw added. Minor attempts on enhancements and cleanup. Package-Manager: portage-2.2.10
| * The Abinit patches incorporated in sci-libs/bigdft-abi-1.0.4-r3.ebuild. When ↵Honza Macháček2014-06-274-34/+62
| | | | | | | | | | | | compiling against sci-libs/scalapack, made to use ScaLAPACK as BLACS as well, not to break sci-physics/abinit by defining fake BLACS routines. Testing removed to appease repoman and avoid copying of all the old test suite over the current broken version. Package-Manager: portage-2.2.10
| * sci-libs/libxc-2.0.3.ebuild adjusted to export the C preprocessor name in ↵Honza Macháček2014-06-272-1/+9
| | | | | | | | | | | | the FCCPP variable that the build system looks for Package-Manager: portage-2.2.10