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* | virtual/mpi: bye bye multilib versionChristoph Junghans2015-11-212-25/+3
* | sci-biology/trinityrnaseq: version bump but dropping KEYWORDS because we relo...Martin Mokrejš2015-11-214-0/+105
* | sci-biology/parafly: document a recent upstream bugreport from githubMartin Mokrejš2015-11-212-0/+6
* | sci-biology/maker: document opened Gentoo bugzilla ticketsMartin Mokrejš2015-11-202-3/+6
* | sci-biology/maker: depend on mpich2 when USE=mpi, add back hard DEPENDency on...Martin Mokrejš2015-11-202-9/+52
* | sci-biology/maker: respect USE=mpi, remove hard DEPENDency on repeatmasker-li...Martin Mokrejš2015-11-202-5/+16
* | sci-biology/repeatmasker-libraries: version bump and improve einfo navigation...Martin Mokrejš2015-11-204-0/+52
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* Merge remote-tracking branch 'github/master'Justin Lecher2015-11-208-60/+233
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| * Merge pull request #528 from akreal/sci-misc/kaldiJustin Lecher2015-11-206-58/+231
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| | * sci-misc/kaldi: Use cuda eclassPavel Denisov2015-11-191-2/+2
| | * sci-misc/kaldi: Add pkg_pretend() to check for suitable CBLAS providerPavel Denisov2015-11-191-5/+11
| | * sci-misc/kaldi: Switch to user-selected BLAS/LAPACKPavel Denisov2015-11-182-33/+58
| | * sci-misc/kaldi: Create unified diff for Makefile patchPavel Denisov2015-11-181-57/+60
| | * sci-misc/kaldi: Create unified diff for default_rules.mk patchPavel Denisov2015-11-181-48/+30
| | * sci-misc/kaldi: Change dohtml to dodocPavel Denisov2015-11-181-1/+1
| | * sci-misc/kaldi: Fix RESTRICT conditionsPavel Denisov2015-11-181-1/+1
| | * sci-misc/kaldi: Fix IUSEPavel Denisov2015-11-181-1/+1
| | * sci-misc/kaldi: Version bump, switch to OpenBLAS math library by default, add...Pavel Denisov2015-11-185-1/+158
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| * Merge pull request #538 from zasdfgbnm/patch-1Justin Lecher2015-11-182-2/+2
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| | * fix dependency on pythonGao, Xiang2015-11-171-1/+1
| | * if rdkit don't uses python,boost won't need useGao, Xiang2015-11-171-2/+2
| | * fix dependency on boost[python]Gao, Xiang2015-11-161-1/+1
* | | sci-biology/hmmer: add updated patchesMartin Mokrejš2015-11-202-0/+102
* | | sci-biology/hmmer: fix ${S} variableMartin Mokrejš2015-11-192-0/+6
* | | sci-biology/ffindex: install under USE=-mpi cases as wellMartin Mokrejš2015-11-192-1/+8
* | | sci-biology/hmmer: version bumpMartin Mokrejš2015-11-194-0/+65
* | | sci-biology/ffindex: add DEPEND on virtual/mpiMartin Mokrejš2015-11-192-1/+5
* | | sci-biology/ffindex: add optional USE=mpiMartin Mokrejš2015-11-192-2/+10
* | | sci-biology/ffindex: fix HOMEPAGE, version bumpMartin Mokrejš2015-11-193-4/+10
* | | sci-biology/TransDecoder: note that Pfam-AB was discontinuedMartin Mokrejš2015-11-192-3/+7
* | | sci-biology/TransDecoder: update homepageMartin Mokrejš2015-11-192-1/+5
* | | sci-biology/TransDecoder: install properly perl modules; fix PERL5INC paths b...Martin Mokrejš2015-11-195-157/+63
* | | sci-biology/BBmap: version bumpMartin Mokrejš2015-11-193-3/+8
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* | dev-python/ipython: Add {line,memory}_profiler to optfeatureJustin Lecher2015-11-171-0/+2
* | Merge remote-tracking branch 'github/master'Justin Lecher2015-11-179-21/+94
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| * Merge pull request #536 from olifre/root6Justin Lecher2015-11-163-13/+26
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| | * sci-physics/root: Update to upstream changes.Oliver Freyermuth2015-11-153-13/+26
| * | Merge pull request #535 from TheChymera/fslJustin Lecher2015-11-162-0/+11
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| | * | sci-biology/fsl: added info about updating environmentHorea Christian2015-11-142-0/+11
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| * | Merge pull request #533 from TheChymera/bumpJustin Lecher2015-11-164-8/+57
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| | * | sci-libs/nipy: removed leading spacesHorea Christian2015-11-123-10/+14
| | * | sci-libs/nipy: updated dependency listHorea Christian2015-11-123-15/+19
| | * | sci-libs/nipy: version bumpHorea Christian2015-11-113-2/+43
* | | | Moved to treeJustin Lecher2015-11-175-87/+0
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* | | Merge branch 'master' of git+ssh://git.gentoo.org/proj/sciJustin Lecher2015-11-1622-133/+277
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| * | | sci-chemistry/votca-csg: update live ebuildChristoph Junghans2015-11-152-1/+4
| * | | sci-biology/codonw: add original Thesis of John Peden describing codonw packa...Martin Mokrejš2015-11-153-2/+9
| * | | sci-biology/BBmap: version bump; apply also the UnicodeToAscii.patchMartin Mokrejš2015-11-153-1/+8
| * | | sci-biology/Rcorrector: add einfo() message that default kmer size 23 is subo...Martin Mokrejš2015-11-152-0/+9
| * | | sci-biology/SEECER: add einfo() message that default kmer size 17 is suboptimalMartin Mokrejš2015-11-152-2/+16