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* sci-biology/kat: respect sse CPU USE flagsMartin Mokrejš2016-12-091-3/+7
* sci-biology/kat:Martin Mokrejš2016-12-091-6/+14
* sci-biology/jellyfish: version bump; respect sse CPU USE flagMartin Mokrejš2016-12-095-3/+81
* sci-biology/freebayes: fix package herd nameMartin Mokrejš2016-12-091-2/+2
* sci-biology/grass: introduce -9999 live version, drop oldMartin Mokrejš2016-12-074-43/+309
* sci-biology/trinityrnaseq: upstream removes fasta_tool script in future versionsMartin Mokrejš2016-12-071-0/+1
* dev-perl/Bio-DB-HTS: remove trailing empty lineMartin Mokrejš2016-12-071-1/+0
* dev-perl/Bio-DB-HTS: new package requiring sci-libs/[static-libs] and using -...Martin Mokrejš2016-12-071-6/+13
* sci-biology/annovar: new packageMartin Mokrejš2016-12-073-0/+52
* sci-biology/ensembl-tools: mimic upstream's INSTALL.pl so we can install on G...Martin Mokrejš2016-12-071-15/+22
* sci-biology/SnpEff: fix installation on PREFIXMartin Mokrejš2016-12-071-6/+6
* sci-biology/SnpEff: version bump, may be moved to our main repoMartin Mokrejš2016-12-072-8/+10
* Merge branch 'master' of ssh://github.com/gentoo-science/sciChristoph Junghans2016-12-062-0/+51
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| * sci-biology/psychopy: version bump (#706)Horea Christian2016-12-032-0/+51
* | sci-libs/trilinos: version bumpChristoph Junghans2016-12-063-0/+814
* | sci-biology/jannovar-bin: version bumpMartin Mokrejš2016-12-043-32/+43
* | sci-biology/jannovar: version bump, seems only one jar can be directly executedMartin Mokrejš2016-12-042-16/+12
* | sci-biology/plinkseq: fixing issues with bundled dev-libs/protobuf and www-se...Martin Mokrejš2016-12-042-3/+64
* | sci-biology/BRAKER: version bump, point to additional dependencyMartin Mokrejš2016-12-032-4/+3
* | sci-biology/maker: record required augustus version actuallyMartin Mokrejš2016-12-031-1/+4
* | sci-biology/ncbi-tools++: add a comment about >=gcc-5.3.0 incompatibilityMartin Mokrejš2016-12-031-0/+3
* | sci-biology/ncbi-tools++: fix bug #579248#c by disabling more testsMartin Mokrejš2016-12-033-0/+13
* | sci-biology/ensembl-tools: add missing dependencyMartin Mokrejš2016-12-021-3/+2
* | dev-perl/Bio-EnsEMBL: new package to provide EnsEMBL Perl APIMartin Mokrejš2016-12-023-0/+48
* | sci-biology/freebayes: note the many bundled deps we need to unbundleMartin Mokrejš2016-12-021-0/+64
* | sci-biology/ensembl-tools: note dependency not yet in science overlayMartin Mokrejš2016-12-022-3/+5
* | sci-biology/stacks: add missing dependencyMartin Mokrejš2016-12-021-1/+2
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* sci-libs/atlas-3.10.3: Add deprecated use flagMarius Brehler2016-12-021-3/+8
* sci-biology/augustus: zap -O3 CFLAG from src/MakefileMartin Mokrejš2016-12-011-1/+2
* sci-biology/gmap: version bump; drop unused USE flags from metadata.xmlMartin Mokrejš2016-12-013-0/+32
* sci-biology/stacks: version bump; drop bundled htslib sources, bug #601366Martin Mokrejš2016-12-012-6/+14
* sci-biology/trinityrnaseq: do not install fasta_tool which belongs to sci-bio...Martin Mokrejš2016-12-013-3/+3
* sci-biology/twinscan: add missing space breaking GLIB_CFLAGSMartin Mokrejš2016-12-011-1/+1
* sci-libs/arrayfire: Fix FindCBLAS.cmake in 3.4.1-r1Marius Brehler2016-12-012-0/+39
* sci-biology/kat: version bump, blocked by upstream issue #61Martin Mokrejš2016-11-302-3/+9
* dev-python/arrayfire-python: Add test phaseMarius Brehler2016-11-291-0/+5
* dev-python/arrayfire-python: Version bump to 3.4.20161126Marius Brehler2016-11-292-0/+23
* sci-libs/arrayfire: Version bump to 3.4.1Marius Brehler2016-11-292-0/+112
* dev-python/arrayfire-python: Drop oldMarius Brehler2016-11-292-23/+0
* dev-python/arrayfire-python: Drop python3_3Marius Brehler2016-11-295-5/+5
* dev-python/arrayfire-python: Restrict package to corresponding arrayfire versionMarius Brehler2016-11-294-0/+4
* dev-python/arrayfire-python: Version bump to 3.3.20160624Marius Brehler2016-11-292-0/+22
* sci-chemistry/gamess: Update install infoAlexey Shvetsov2016-11-291-0/+4
* sci-chemistry/gamess: Update gamess version. Clean old onesAlexey Shvetsov2016-11-295-589/+43
* sci-libs/pydicom: Drop 0.9.8Marius Brehler2016-11-282-19/+0
* sci-libs/bloom: Move SRC_URI from google code to github; Fix compilationMarius Brehler2016-11-281-5/+5
* sci-misc/mitlm: Move SRC_URI from google code to githubMarius Brehler2016-11-281-3/+3
* licenses: Add MIT-KhronosGroup licenseMarius Brehler2016-11-281-0/+25
* dev-libs/opencl-clhpp: New ebuild providing C++ headers for OpenCL developmentMarius Brehler2016-11-283-0/+42
* sci-libs/clfft: Version bump to 2.12.2Marius Brehler2016-11-282-0/+54