Commit message (Collapse) | Author | Age | Files | Lines | |
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* | sci-biology/MolBioLib: yet another package with bundled samtools, bamtools etc. | Martin Mokrejš | 2016-04-01 | 3 | -0/+44 |
| | | | | Package-Manager: portage-2.2.28 | ||||
* | dev-python/hdf5storage: Version bump | Marius Brehler | 2016-04-01 | 2 | -0/+23 |
| | | | | Package-Manager: portage-2.2.26 | ||||
* | sci-biology/roche454ace2caf: Drop keywords, Bump to EAPI=6 | Marius Brehler | 2016-04-01 | 1 | -3/+3 |
| | | | | Package-Manager: portage-2.2.26 | ||||
* | sci-biology/gap2caf: Drop keywords | Marius Brehler | 2016-04-01 | 1 | -2/+2 |
| | | | | Package-Manager: portage-2.2.26 | ||||
* | sci-biology/staden: Drop keywords since keywords were droped for staden_doc | Marius Brehler | 2016-04-01 | 1 | -1/+1 |
| | | | | Package-Manager: portage-2.2.26 | ||||
* | sci-biology/staden: Fix copyright and dependcies | Marius Brehler | 2016-04-01 | 2 | -4/+4 |
| | | | | | Package-Manager: portage-2.2.26 RepoMan-Options: --force | ||||
* | sci-libs/clfft: Version bump | Marius Brehler | 2016-04-01 | 2 | -0/+54 |
| | | | | Package-Manager: portage-2.2.26 | ||||
* | sci-libs/armadillo: Version bump to 6.600.5 | Marius Brehler | 2016-04-01 | 2 | -0/+122 |
| | | | | Package-Manager: portage-2.2.26 | ||||
* | sci-libs/armadillo: Version bump from 6.200.3 to 6.200.5 | Marius Brehler | 2016-04-01 | 2 | -1/+1 |
| | | | | Package-Manager: portage-2.2.26 | ||||
* | dev-python/matplotlib2tikz: Version bump | Marius Brehler | 2016-04-01 | 2 | -0/+25 |
| | | | | Package-Manager: portage-2.2.26 | ||||
* | sci-biology/bamtools: version bump; still suffers gentoo bug #550144 | Martin Mokrejš | 2016-04-01 | 3 | -0/+55 |
| | | | | Package-Manager: portage-2.2.28 | ||||
* | sci-biology/reapr: quick and dirty Debian patches do not help me with ↵ | Martin Mokrejš | 2016-04-01 | 3 | -3/+277 |
| | | | | | | sci-biology/bamtools-2.3.0 installed site-wide; the bundled bamtools do not start to compile and tehrefore reapr linking steps fail while using using system-wide incompatible version Package-Manager: portage-2.2.28 | ||||
* | sci-biology/karect: new package | Martin Mokrejš | 2016-03-31 | 3 | -0/+46 |
| | | | | Package-Manager: portage-2.2.28 | ||||
* | sci-biology/cross_genome: polish ebuild syntax | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 |
| | | | | Package-Manager: portage-2.2.28 | ||||
* | sci-biology/CONTIGuator: version bump; added KEYWORDS because DEPENDencies ↵ | Martin Mokrejš | 2016-03-30 | 3 | -17/+32 |
| | | | | | | are in the tree now Package-Manager: portage-2.2.28 | ||||
* | sci-biology/arachne: new package; does not compile (upstream contacted) and ↵ | Martin Mokrejš | 2016-03-30 | 3 | -0/+54 |
| | | | | | | the LICENSE is not exactly MIT? Package-Manager: portage-2.2.28 | ||||
* | sci-biology/cap3-bin: fix version number to match version generated at ↵ | Martin Mokrejš | 2016-03-30 | 3 | -0/+43 |
| | | | | | | runtime; added new version Package-Manager: portage-2.2.28 | ||||
* | sci-biology/reapr: new package with bundled samtools, bamtools, tabix ↵ | Martin Mokrejš | 2016-03-30 | 3 | -0/+70 |
| | | | | | | (nowadays part of samtools) and other binaries; does not link probably due to a clash of symbols with my system-wide installed -lbamtools Package-Manager: portage-2.2.28 | ||||
* | sci-biology/exomiser-bin: improve ebuild, fix LICENSE, a 19GB files should ↵ | Martin Mokrejš | 2016-03-30 | 3 | -24/+34 |
| | | | | | | be fetched manually but the ebuild should get access to it, unpack it and install as the files make grounding for a usable workspace Package-Manager: portage-2.2.28 | ||||
* | sci-biology/DisEMBL: added DEPENDency on tisean | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 |
| | | | | Package-Manager: portage-2.2.28 | ||||
* | sci-biology/TransDecoder: version bump | Martin Mokrejš | 2016-03-30 | 3 | -0/+106 |
| | | | | Package-Manager: portage-2.2.28 | ||||
* | fixing /# : $/# $/ | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 |
| | | | | Package-Manager: portage-2.2.28 | ||||
* | fixing /# : $/# $/ | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 |
| | | | | Package-Manager: portage-2.2.28 | ||||
* | fixing /# : $/# $/ | Martin Mokrejš | 2016-03-30 | 3 | -0/+38 |
| | | | | Package-Manager: portage-2.2.28 | ||||
* | Merge branch 'master' of git+ssh://git.gentoo.org/proj/sci | Martin Mokrejš | 2016-03-30 | 3 | -0/+305 |
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| * | Merge branch 'master' of git+ssh://git.gentoo.org/proj/sci | Honza Macháček | 2016-03-30 | 7 | -13/+108 |
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| * | | sci-chemistry/nwchem version bumped to 6.6 with minor ebuild improvements; ↵ | Honza Macháček | 2016-03-30 | 3 | -0/+305 |
| | | | | | | | | | | | | | | | | | | Infiniband support should compile, source patched to allow unique names for all atoms Package-Manager: portage-2.2.27 | ||||
* | | | sci-biology/perga: added some LICENSE, fix CFLAGS | Martin Mokrejš | 2016-03-30 | 2 | -0/+48 |
| |/ |/| | | | | | Package-Manager: portage-2.2.28 | ||||
* | | sci-biology/artemis: install docs, cleanup ebuild and bring it in sync with ↵ | Martin Mokrejš | 2016-03-30 | 2 | -6/+16 |
| | | | | | | | | | | | | sci-biology/act-bin and sci-biology/artemis-9999 Package-Manager: portage-2.2.28 | ||||
* | | sci-biology/artemis-bin: install docs, cleanup ebuild and bring it in sync ↵ | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 |
| | | | | | | | | | | | | with sci-biology/act-bin and sci-biology/artemis-9999 Package-Manager: portage-2.2.28 | ||||
* | | sci-biology/artemis-bin: install docs, cleanup ebuild and bring it in sync ↵ | Martin Mokrejš | 2016-03-30 | 2 | -6/+25 |
| | | | | | | | | | | | | with sci-biology/act-bin and sci-biology/artemis-9999 Package-Manager: portage-2.2.28 | ||||
* | | sci-biology/act-bin: new java package with upstream binaries | Martin Mokrejš | 2016-03-30 | 3 | -0/+66 |
|/ | | | | Package-Manager: portage-2.2.28 | ||||
* | sci-biology/scaffold_builder: clarify description | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 |
| | | | | Package-Manager: portage-2.2.28 | ||||
* | sci-biology/staden_doc: removing KEYWORDS as upstream just fixed generation ↵ | Martin Mokrejš | 2016-03-29 | 1 | -1/+1 |
| | | | | | | of the manual pages, currently available code does not work Package-Manager: portage-2.2.28 | ||||
* | Don't check metadata.xml | Justin Lecher | 2016-03-29 | 1 | -3/+3 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | Merge branch 'heroxbd-master' | Justin Lecher | 2016-03-29 | 1 | -1/+1 |
|\ | | | | | | | | | | | | | * heroxbd-master: sys-cluster/modules: fix typo. /etc/modulefiles. GitHub: closes gentoo-science/sci#559 | ||||
| * | sys-cluster/modules: fix typo. /etc/modulefiles. | Benda Xu | 2016-03-29 | 1 | -1/+1 |
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* | Don't exit but false | Justin Lecher | 2016-03-29 | 1 | -1/+1 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-biology/perlprimer: Follow pkgmove of perl-tk | Justin Lecher | 2016-03-29 | 2 | -5/+1 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | profiles: Mask sci-biology/perlprimer due to unknown revdep | Justin Lecher | 2016-03-29 | 1 | -0/+4 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-biology/manatee-igs: Fix typo in deps | Justin Lecher | 2016-03-29 | 1 | -3/+3 |
| | | | | | | * Bump to EAPI=6 Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-biology/ONTO-PERL: Fix typo in deps | Justin Lecher | 2016-03-29 | 1 | -3/+3 |
| | | | | | | * Bump to EAPI=6 Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | Merge remote-tracking branch 'github/master' | Justin Lecher | 2016-03-29 | 18 | -147/+187 |
|\ | | | | | | | | | | | | | * github/master: sci-libs/calculix-ccx-2.10 sci-libs/calculix-cgx-2.10 version bump (ref #602) dev-python/ffnet: Add new ffnet and ffnetui ebuilds sci-physics/genfit: Change live-ebuild to github. | ||||
| * | Merge pull request #603 from apieum/calculix-2.10 | Justin Lecher | 2016-03-25 | 10 | -135/+98 |
| |\ | | | | | | | sci-libs/calculix-ccx-2.10 and sci-libs/calculix-cgx-2.10: version bump #602 | ||||
| | * | sci-libs/calculix-ccx-2.10 sci-libs/calculix-cgx-2.10 version bump (ref #602) | Grégory Salvan | 2016-03-22 | 10 | -135/+98 |
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| * | dev-python/ffnet: Add new ffnet and ffnetui ebuilds | Marek Wojciechowski | 2016-03-21 | 7 | -9/+87 |
| | | | | | | | | | | | | | | | | | | | | | | | | | | * Add new ffnet-0.8.3.ebuild. * Add dev-python/ffnetui - GUI for ffnet * Update ffnet, ffnetui ebuilds formatting * Update ffnetui header * dev-python/ffnet: Switch to EAPI=6 and other repoman suggestions * dev-python/ffnetui: Switch to EAPI=6 and other repoman suggestions * dev-python/ffnet: Update inherit line and examples instalation * dev-python/ffnet: Update metadata * dev-python/ffnetui: Update metadata * dev-python/ffnetui: Drop flag-o-matic and toolchain-funcs | ||||
| * | Merge pull request #604 from olifre/genfit-git | Justin Lecher | 2016-03-19 | 1 | -3/+2 |
| |\ | | | | | | | sci-physics/genfit: Change live-ebuild to github. | ||||
| | * | sci-physics/genfit: Change live-ebuild to github. | Oliver Freyermuth | 2016-03-15 | 1 | -3/+2 |
| |/ | | | | | | | | | Upstream moved current development to github in the last weeks. | ||||
* | | Travis: Use portage 2.2.28 | Justin Lecher | 2016-03-29 | 1 | -1/+1 |
| | | | | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | | sci-biology/staden: add a note about some tutorial available | Martin Mokrejš | 2016-03-25 | 2 | -0/+8 |
| | | | | | | | | Package-Manager: portage-2.2.26 |