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* sci-biology/MolBioLib: yet another package with bundled samtools, bamtools etc.Martin Mokrejš2016-04-013-0/+44
| | | | Package-Manager: portage-2.2.28
* dev-python/hdf5storage: Version bumpMarius Brehler2016-04-012-0/+23
| | | | Package-Manager: portage-2.2.26
* sci-biology/roche454ace2caf: Drop keywords, Bump to EAPI=6Marius Brehler2016-04-011-3/+3
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* sci-biology/gap2caf: Drop keywordsMarius Brehler2016-04-011-2/+2
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* sci-biology/staden: Drop keywords since keywords were droped for staden_docMarius Brehler2016-04-011-1/+1
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* sci-biology/staden: Fix copyright and dependciesMarius Brehler2016-04-012-4/+4
| | | | | Package-Manager: portage-2.2.26 RepoMan-Options: --force
* sci-libs/clfft: Version bumpMarius Brehler2016-04-012-0/+54
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* sci-libs/armadillo: Version bump to 6.600.5Marius Brehler2016-04-012-0/+122
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* sci-libs/armadillo: Version bump from 6.200.3 to 6.200.5Marius Brehler2016-04-012-1/+1
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* dev-python/matplotlib2tikz: Version bumpMarius Brehler2016-04-012-0/+25
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* sci-biology/bamtools: version bump; still suffers gentoo bug #550144Martin Mokrejš2016-04-013-0/+55
| | | | Package-Manager: portage-2.2.28
* sci-biology/reapr: quick and dirty Debian patches do not help me with ↵Martin Mokrejš2016-04-013-3/+277
| | | | | | sci-biology/bamtools-2.3.0 installed site-wide; the bundled bamtools do not start to compile and tehrefore reapr linking steps fail while using using system-wide incompatible version Package-Manager: portage-2.2.28
* sci-biology/karect: new packageMartin Mokrejš2016-03-313-0/+46
| | | | Package-Manager: portage-2.2.28
* sci-biology/cross_genome: polish ebuild syntaxMartin Mokrejš2016-03-301-1/+1
| | | | Package-Manager: portage-2.2.28
* sci-biology/CONTIGuator: version bump; added KEYWORDS because DEPENDencies ↵Martin Mokrejš2016-03-303-17/+32
| | | | | | are in the tree now Package-Manager: portage-2.2.28
* sci-biology/arachne: new package; does not compile (upstream contacted) and ↵Martin Mokrejš2016-03-303-0/+54
| | | | | | the LICENSE is not exactly MIT? Package-Manager: portage-2.2.28
* sci-biology/cap3-bin: fix version number to match version generated at ↵Martin Mokrejš2016-03-303-0/+43
| | | | | | runtime; added new version Package-Manager: portage-2.2.28
* sci-biology/reapr: new package with bundled samtools, bamtools, tabix ↵Martin Mokrejš2016-03-303-0/+70
| | | | | | (nowadays part of samtools) and other binaries; does not link probably due to a clash of symbols with my system-wide installed -lbamtools Package-Manager: portage-2.2.28
* sci-biology/exomiser-bin: improve ebuild, fix LICENSE, a 19GB files should ↵Martin Mokrejš2016-03-303-24/+34
| | | | | | be fetched manually but the ebuild should get access to it, unpack it and install as the files make grounding for a usable workspace Package-Manager: portage-2.2.28
* sci-biology/DisEMBL: added DEPENDency on tiseanMartin Mokrejš2016-03-301-1/+1
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* sci-biology/TransDecoder: version bumpMartin Mokrejš2016-03-303-0/+106
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* fixing /# : $/# $/Martin Mokrejš2016-03-301-1/+1
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* fixing /# : $/# $/Martin Mokrejš2016-03-301-1/+1
| | | | Package-Manager: portage-2.2.28
* fixing /# : $/# $/Martin Mokrejš2016-03-303-0/+38
| | | | Package-Manager: portage-2.2.28
* Merge branch 'master' of git+ssh://git.gentoo.org/proj/sciMartin Mokrejš2016-03-303-0/+305
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| * Merge branch 'master' of git+ssh://git.gentoo.org/proj/sciHonza Macháček2016-03-307-13/+108
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| * | sci-chemistry/nwchem version bumped to 6.6 with minor ebuild improvements; ↵Honza Macháček2016-03-303-0/+305
| | | | | | | | | | | | | | | | | | Infiniband support should compile, source patched to allow unique names for all atoms Package-Manager: portage-2.2.27
* | | sci-biology/perga: added some LICENSE, fix CFLAGSMartin Mokrejš2016-03-302-0/+48
| |/ |/| | | | | Package-Manager: portage-2.2.28
* | sci-biology/artemis: install docs, cleanup ebuild and bring it in sync with ↵Martin Mokrejš2016-03-302-6/+16
| | | | | | | | | | | | sci-biology/act-bin and sci-biology/artemis-9999 Package-Manager: portage-2.2.28
* | sci-biology/artemis-bin: install docs, cleanup ebuild and bring it in sync ↵Martin Mokrejš2016-03-301-1/+1
| | | | | | | | | | | | with sci-biology/act-bin and sci-biology/artemis-9999 Package-Manager: portage-2.2.28
* | sci-biology/artemis-bin: install docs, cleanup ebuild and bring it in sync ↵Martin Mokrejš2016-03-302-6/+25
| | | | | | | | | | | | with sci-biology/act-bin and sci-biology/artemis-9999 Package-Manager: portage-2.2.28
* | sci-biology/act-bin: new java package with upstream binariesMartin Mokrejš2016-03-303-0/+66
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* sci-biology/scaffold_builder: clarify descriptionMartin Mokrejš2016-03-301-1/+1
| | | | Package-Manager: portage-2.2.28
* sci-biology/staden_doc: removing KEYWORDS as upstream just fixed generation ↵Martin Mokrejš2016-03-291-1/+1
| | | | | | of the manual pages, currently available code does not work Package-Manager: portage-2.2.28
* Don't check metadata.xmlJustin Lecher2016-03-291-3/+3
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Merge branch 'heroxbd-master'Justin Lecher2016-03-291-1/+1
|\ | | | | | | | | | | | | * heroxbd-master: sys-cluster/modules: fix typo. /etc/modulefiles. GitHub: closes gentoo-science/sci#559
| * sys-cluster/modules: fix typo. /etc/modulefiles.Benda Xu2016-03-291-1/+1
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* Don't exit but falseJustin Lecher2016-03-291-1/+1
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/perlprimer: Follow pkgmove of perl-tkJustin Lecher2016-03-292-5/+1
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* profiles: Mask sci-biology/perlprimer due to unknown revdepJustin Lecher2016-03-291-0/+4
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/manatee-igs: Fix typo in depsJustin Lecher2016-03-291-3/+3
| | | | | | * Bump to EAPI=6 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/ONTO-PERL: Fix typo in depsJustin Lecher2016-03-291-3/+3
| | | | | | * Bump to EAPI=6 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Merge remote-tracking branch 'github/master'Justin Lecher2016-03-2918-147/+187
|\ | | | | | | | | | | | | * github/master: sci-libs/calculix-ccx-2.10 sci-libs/calculix-cgx-2.10 version bump (ref #602) dev-python/ffnet: Add new ffnet and ffnetui ebuilds sci-physics/genfit: Change live-ebuild to github.
| * Merge pull request #603 from apieum/calculix-2.10Justin Lecher2016-03-2510-135/+98
| |\ | | | | | | sci-libs/calculix-ccx-2.10 and sci-libs/calculix-cgx-2.10: version bump #602
| | * sci-libs/calculix-ccx-2.10 sci-libs/calculix-cgx-2.10 version bump (ref #602)Grégory Salvan2016-03-2210-135/+98
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| * dev-python/ffnet: Add new ffnet and ffnetui ebuildsMarek Wojciechowski2016-03-217-9/+87
| | | | | | | | | | | | | | | | | | | | | | | | | | * Add new ffnet-0.8.3.ebuild. * Add dev-python/ffnetui - GUI for ffnet * Update ffnet, ffnetui ebuilds formatting * Update ffnetui header * dev-python/ffnet: Switch to EAPI=6 and other repoman suggestions * dev-python/ffnetui: Switch to EAPI=6 and other repoman suggestions * dev-python/ffnet: Update inherit line and examples instalation * dev-python/ffnet: Update metadata * dev-python/ffnetui: Update metadata * dev-python/ffnetui: Drop flag-o-matic and toolchain-funcs
| * Merge pull request #604 from olifre/genfit-gitJustin Lecher2016-03-191-3/+2
| |\ | | | | | | sci-physics/genfit: Change live-ebuild to github.
| | * sci-physics/genfit: Change live-ebuild to github.Oliver Freyermuth2016-03-151-3/+2
| |/ | | | | | | | | Upstream moved current development to github in the last weeks.
* | Travis: Use portage 2.2.28Justin Lecher2016-03-291-1/+1
| | | | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* | sci-biology/staden: add a note about some tutorial availableMartin Mokrejš2016-03-252-0/+8
| | | | | | | | Package-Manager: portage-2.2.26