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* sci-biology/snapgene-viewer: New packagePacho Ramos2023-11-101-0/+221
| | | | Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* licenses: cleanup old licensesAndrew Ammerlaan2023-05-026-1355/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/matlabengine: add version 9.13.7Andrew Ammerlaan2023-03-031-0/+7
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* licenses: cleanupAndrew Ammerlaan2022-12-012-113/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* licenses: cleanupAndrew Ammerlaan2022-12-011-76/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* licenses: drop unused licensesAndrew Ammerlaan2022-01-252-59/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* licenses: remove unused licenseAndrew Ammerlaan2022-01-231-519/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-mathematics/scilab-bin: add version 6.1.1Andrew Ammerlaan2022-01-112-0/+319
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | I officially give up on making a non-bin ebuild. There are several problems: 1. The java dependencies are extremely difficult because of packaging systems that portage does not support (gralde, maven etc). We can hack around this as we did in dev-java/lucene::sci, but that is *a lot* of work, for a lot of dependencies that has to be redone on each version bump. We can solve this problem by getting the pre-compiled java dependencies from https://github.com/scilab/scilab-prerequirements. However.... 2. Scilab requires versions of libraries that we do not package any more in ::gentoo (e.g. hdf5). And adding and maintaining ebuilds for those old libraries is too much work. 3. If we take *only* the java stuff from scilab/scilab-prerequirements, build fails (likely incompatibility with certain versions of some non-java libraries, see 2.) 4. If we take *all* of scilab/scilab-prerequirements build still fails (with a different error this time). 5. The amount of scilab dependencies that are being last-rited and I therefore have to move to ::science to keep the dependencies resolving is increasing. Scilab is the number 1 cause of ::science breaking at the moment. Long story short, please enjoy this pre-compiled binary ebuild that actually works and will save us all a lot of headache. Closes: https://bugs.gentoo.org/237572 Closes: https://bugs.gentoo.org/691272 Closes: https://github.com/gentoo/sci/issues/879 Closes: https://github.com/gentoo/sci/issues/774 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* licenses: remove unused licenseAndrew Ammerlaan2021-08-311-7/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* licenses/netCDF: remove unused licenseAndrew Ammerlaan2021-07-031-31/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* licenses: clean up unused licensesAndrew Ammerlaan2021-03-061-453/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* licenses/* clean-up unused licensesAndrew Ammerlaan2021-02-252-144/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* licenses: remove unused licensesAndrew Ammerlaan2021-02-043-194/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* lcienses: remove unused licenseAndrew Ammerlaan2021-01-301-36/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* licenses: add file for scilab-5.5.2Fabio Rossi2021-01-241-0/+519
| | | | | Signed-off-by: Fabio Rossi <rossi.f@inwind.it> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* license/ remove unused licensesAndrew Ammerlaan2021-01-194-170/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* app-text/noweb: new depAndrew Ammerlaan2021-01-1027-2655/+22
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* licenses/ATLAS: drop unused licenseAisha Tammy2020-12-311-48/+0
| | | | Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* licenses/NVIDIA-gdk: no longer neededAisha Tammy2020-12-301-32/+0
| | | | Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* */* clean up licensesAndrew Ammerlaan2020-12-299-2279/+0
| | | | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net> Closes: https://github.com/gentoo/sci/pull/1000 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* licenses: cleanupAndrew Ammerlaan2020-12-201-318/+0
| | | | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net> Closes: https://github.com/gentoo/sci/pull/998 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* license: Add XVIEW liecenseMarius Brehler2020-10-211-0/+25
| | | | | Signed-off-by: Marius Brehler <marius.brehler+gentoo@googlemail.com> Signed-off-by: Horea Christian <chr@chymera.eu>
* license: Remove NVIDIA-CUDA licenseMarius Brehler2020-10-201-2297/+0
| | | | | Signed-off-by: Marius Brehler <marius.brehler+gentoo@googlemail.com> Signed-off-by: Horea Christian <chr@chymera.eu>
* Add UCSF-Motioncor2 licenseAlexey Shvetsov2019-10-291-0/+19
| | | | Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* [licenses] Add Janelia-1.2Alexey Shvetsov2019-10-291-0/+9
| | | | Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* Drop the extraneous license fileMartin Mokrejs2019-07-071-26/+0
| | | | It is just an ordinary 3-clause BSD license.
* Drop BSD-2 license of sci-biology/tabletMartin Mokrejs2019-03-251-10/+0
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* licenses: Add missing licensesJustin Lecher2018-06-212-0/+115
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/gatk: add the missing licenseMartin Mokrejs2018-04-211-0/+26
| | | | | I always forget that repoman ignores license files scheduled for commit and that I have to use 'git commit' solely for that.
* profiles: Remove last mentions of sci-libs/acmlDavid Seifert2017-09-021-428/+0
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* Add missing license for gamessJustin Lecher2017-06-231-0/+42
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-mathematics/petsc: fix licenseMatthias Maier2017-05-251-50/+0
| | | | | | petsc 3.5 and newer is released under a two-clause BSD license Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-biology/oncotator: add license fileMartin Mokrejš2017-04-201-0/+46
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* dev-python/pyvcf: add license fileMartin Mokrejš2017-04-201-0/+46
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* Add missing licenseJustin Lecher2017-03-211-0/+188
| | | | | | fixes GH:758 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* licenses: Add MIT-KhronosGroup licenseMarius Brehler2016-11-281-0/+25
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* Drop cdfplayer as it is in the tree alreadyJustin Lecher2016-07-241-143/+0
| | | | | | Fixes gentoo-science/sci#650 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/stampy: new package; installs into wrong PYTHON library pathMartin Mokrejš2016-07-151-0/+22
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* license: Add updates updated NVIDIA-CUDA licenseMarius Brehler2016-05-301-0/+2297
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* sci-biology/genometools: another attempt to add the licenseMartin Mokrejš2016-01-051-0/+14
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* sci-biology/mRNAmarkup: another attempt to add the licenseMartin Mokrejš2016-01-051-0/+25
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* licenses: Add ccp4 license to overlayMarius Brehler2015-11-021-0/+371
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* Moved to treeMarius Brehler2015-09-211-2297/+0
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* licenses: Add OpenSIFT licenseMarius Brehler2015-09-201-0/+57
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* Add updated NVIDIA-CUDA EULAMarius Brehler2015-07-081-0/+2297
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* Drop NVIDIA-CUDA licenseMarius Brehler2015-05-121-2262/+0
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* Dummy polyphen licenseMarius Brehler2015-05-091-0/+7
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* Identical to BSDJustin Lecher2015-05-041-34/+0
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Add HalfLICENSEMarius Brehler2015-05-041-0/+34
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* sci-biology/rum: added license fileMartin Mokrejš2015-04-181-0/+7
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