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* profiles/package.mask: mask dev-java/netcdf for removalAndrew Ammerlaan2021-05-081-0/+10
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/trowel: remove masked packageAndrew Ammerlaan2021-03-201-6/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/tclust: remove masked packageAndrew Ammerlaan2021-03-201-5/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/sclust: remove masked packageAndrew Ammerlaan2021-03-201-5/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/igv: remove masked packageAndrew Ammerlaan2021-03-201-7/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/grass: remove masked packageAndrew Ammerlaan2021-03-201-5/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/dna2pep: remove masked packageAndrew Ammerlaan2021-03-201-5/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/autoeditor: remove masked packageAndrew Ammerlaan2021-03-191-5/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/BG7: remove masked packageAndrew Ammerlaan2021-03-191-5/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-chemistry/hydronmr: remove masked packageAndrew Ammerlaan2021-03-191-5/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/libcgnsoo: remove masked packageAndrew Ammerlaan2021-03-191-6/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-mathematics/burrtool: remove masked packageAndrew Ammerlaan2021-03-191-6/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/edena: fix build, EAPI bumpAndrew Ammerlaan2021-03-182-5/+0
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/perga: EAPI bump, fix buildAndrew Ammerlaan2021-03-181-5/+0
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* Revert "{metadata,profiles}: add the ability to mask per profile in overlay"Andrew Ammerlaan2021-03-135-23/+0
| | | | | | | | revert this until I figure out why it doesn't work This reverts commit 3f7fad2f7170cd44f1019865604c6ed196f5b03c. Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* {metadata,profiles}: add the ability to mask per profile in overlayAndrew Ammerlaan2021-03-135-0/+23
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* dev-python: add holoviz packagesleycec2021-03-131-0/+3
| | | | | | | | add dev-python/{colorcet,holoviews,panel,param,pyct,pyviz_comms} Signed-off-by: Cecil Curry <leycec@gmail.com> Closes: https://github.com/gentoo/sci/pull/1063 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask trowel for removalAndrew Ammerlaan2021-03-061-0/+6
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask tclust for removalAndrew Ammerlaan2021-03-061-0/+5
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask sclust for removalAndrew Ammerlaan2021-03-061-0/+5
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask perga for removalAndrew Ammerlaan2021-03-061-0/+5
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask igv for removalAndrew Ammerlaan2021-03-061-0/+7
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask grass for removalAndrew Ammerlaan2021-03-061-0/+5
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask edena for removalAndrew Ammerlaan2021-03-061-0/+4
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask dna2pep for removal, py2 onlyAndrew Ammerlaan2021-03-061-0/+6
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask autoeditor for removalAndrew Ammerlaan2021-03-051-0/+5
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask BG7 for removalAndrew Ammerlaan2021-03-051-0/+5
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask hydronmr for removalAndrew Ammerlaan2021-03-051-0/+5
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask libcgnsoo for removalAndrew Ammerlaan2021-03-041-0/+6
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.mask: mask burrtools for removalAndrew Ammerlaan2021-03-041-0/+6
| | | | | | | does not compile, last touched in 2015 last upstream update in 2013 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/Sibelia: remove py2.7 rdep packageAndrew Ammerlaan2021-03-031-10/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* profiles/package.mask: mark sci-biology/Sibelia for removal in 14 daysAndrew Ammerlaan2021-02-131-0/+5
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/canu: version bump, bump py targetsAndrew Ammerlaan2021-02-131-1/+0
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* profiles/package.mask: mask Python 2-only packagesSam James2021-02-121-0/+6
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* profiles/updates: move phusion to phusion2Andrew Ammerlaan2021-02-031-1/+1
| | | | | | and this time with the correct spelling Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/fusion: remove, duplicate of fusion2Andrew Ammerlaan2021-02-031-0/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* profiles/updates: move elmer sub packs into elmer-femAndrew Ammerlaan2021-01-301-0/+7
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* package.use.mask: mask sci-libs/pytorch[mkl].Benda Xu2021-01-241-0/+5
| | | | | Bug: https://github.com/gentoo/sci/issues/1011 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* dev-java/hdf-java: remove obsolete packAndrew Ammerlaan2021-01-191-6/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/aghermann: fix fetchAndrew Ammerlaan2021-01-191-4/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/argo-bin: remove pack, upstream goneAndrew Ammerlaan2021-01-191-1/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/bambino: remove pack, upstream goneAndrew Ammerlaan2021-01-191-1/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/BBmap: version bumpAndrew Ammerlaan2021-01-191-1/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/beagle: version bump, fix fetchAndrew Ammerlaan2021-01-191-1/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/blue: remove pack, upstream goneAndrew Ammerlaan2021-01-191-1/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/cd-hit-auxtools: remove pack, upstream goneAndrew Ammerlaan2021-01-191-1/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/cegma: discontinued upstreamAndrew Ammerlaan2021-01-191-1/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/cgview-bin: version bump, fix fetchAndrew Ammerlaan2021-01-191-1/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/clover: remove pack, upstream goneAndrew Ammerlaan2021-01-191-1/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-biology/cnrun: fix fetch, EAPI bumpAndrew Ammerlaan2021-01-191-2/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>