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This commit cleans up the Makefiles a bit.
1. Do not override user's environment if the variables were are set.
2. Prefer site-wide installation of samtools-0.1.x if existing.
3. Do not force -L/lib or -L/usr/lib64, that is handled by the compiler/linker
and very importantly, properly.
4. Cleanup spaces and other style inconsistencies.
https://github.com/aquaskyline/SOAPdenovo2/pull/44
Package-Manager: Portage-2.3.31, Repoman-2.3.9
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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https://manpages.debian.org/testing/soapdenovo2/soapdenovo2.1.en.html
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Will need to bring in Debian med patches from git://anonscm.debian.org/debian-med/soapdenovo2.git
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Does not respect CFLAGS, compile fails
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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