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* sci-biology/picard: use EGIT_COMMIT to fetch by a release tagMartin Mokrejs2018-04-121-1/+1
| | | | | Closes: https://bugs.gentoo.org/653012 Package-Manager: Portage-2.3.27, Repoman-2.3.9
* sci-biology/picard: do not compile testsuite by defaultMartin Mokrejs2018-04-121-1/+2
| | | | Package-Manager: Portage-2.3.27, Repoman-2.3.9
* sci-biology/picard: bring in the latest release actuallyMartin Mokrejs2018-04-122-1/+1
| | | | Package-Manager: Portage-2.3.27, Repoman-2.3.9
* sci-biology/picard: version bump (not working yet)Martin Mokrejs2018-04-123-61/+63
| | | | | | Bug: https://github.com/broadinstitute/picard/issues/605 Bug: https://bugs.gentoo.org/653012 Package-Manager: Portage-2.3.27, Repoman-2.3.9
* Consistently ident with tabsJustin Lecher2017-11-181-1/+1
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/picard: version bumpMartin Mokrejš2017-07-282-2/+2
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3
* Cleanup remote IDsJustin Lecher2017-04-301-1/+1
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Update remote idsJustin Lecher2017-04-291-1/+2
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Drop leftover from CVS in HEADERJustin Lecher2017-02-254-4/+0
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/picard: version bumpMartin Mokrejš2017-02-232-1/+1
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* Drop quoting form EAPIJustin Lecher2017-02-054-4/+4
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Drop all trailing whitespacesJustin Lecher2017-02-051-2/+2
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/picard-9999: reintroduce src_prepare(), drop ant dependenciesMartin Mokrejš2017-01-241-3/+6
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/picard-9999: do not apply the 2.2.2-build.xml.patchMartin Mokrejš2017-01-241-5/+0
| | | | | | | Current git checkouts contain a fake build.xml which instructs users to use gradle instead of ant. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* Revert "sci-biology/picard-9999: apply the 2.2.2 patch to drop bundled htsjdk"Martin Mokrejš2017-01-241-1/+1
| | | | | | | | | | This reverts commit 1bd613187ee8a70163d0d21bbe5ea726f53c5490. Weird, on two hosts this patch does not apply because the build.xml is updated. Somehow I have "old" git checkout on my dev machine although all are at commit 3800c8218b8e4c75a4db14f97b409dbcc3dcaaa8. Will fix the -9999 ebuild in a moment.
* sci-biology/picard-9999: apply the 2.2.2 patch to drop bundled htsjdkMartin Mokrejš2017-01-241-1/+1
| | | | | | | | This is probably not needed as currently it uses gradlew to build but the patch still applies to build.xml and maybe somebody will manage to resurrect the ant-based build process. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/picard: still not working ebuild for current gradle-based build ↵Martin Mokrejš2017-01-211-2/+2
| | | | | | | | system https://github.com/broadinstitute/picard/issues/693 Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/picard: adjust to test directory now moved elsewhere in src streeMartin Mokrejš2017-01-201-1/+1
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/picard-2.8.1: version bump, do not compile tests by defaultMartin Mokrejš2017-01-122-1/+61
| | | | | | | Also add a live ebuild so we can test upstream with the gradle build system. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/picard: upstream moved from ant to gradle build systemMartin Mokrejš2017-01-114-2/+62
| | | | | | | Building does not work for me due to: https://github.com/broadinstitute/picard/issues/693 Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/picard: brought ebuild for 2.2.2 to a somewhat workable state. ↵Johann Schmitz2016-04-242-34/+129
| | | | | | Dropped test execution for now. Package-Manager: portage-2.2.26
* sci-biology/picard: preparing last java7-compatible version and one for java8Martin Mokrejš2016-04-224-0/+164
Package-Manager: portage-2.2.28