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* sci-biology/ncbi-tools++: add a comment about >=gcc-5.3.0 incompatibilityMartin Mokrejš2016-12-031-0/+3
* sci-biology/ncbi-tools++: fix bug #579248#c by disabling more testsMartin Mokrejš2016-12-033-0/+13
* sci-biology/ensembl-tools: add missing dependencyMartin Mokrejš2016-12-021-3/+2
* sci-biology/freebayes: note the many bundled deps we need to unbundleMartin Mokrejš2016-12-021-0/+64
* sci-biology/ensembl-tools: note dependency not yet in science overlayMartin Mokrejš2016-12-022-3/+5
* sci-biology/stacks: add missing dependencyMartin Mokrejš2016-12-021-1/+2
* sci-biology/augustus: zap -O3 CFLAG from src/MakefileMartin Mokrejš2016-12-011-1/+2
* sci-biology/gmap: version bump; drop unused USE flags from metadata.xmlMartin Mokrejš2016-12-013-0/+32
* sci-biology/stacks: version bump; drop bundled htslib sources, bug #601366Martin Mokrejš2016-12-012-6/+14
* sci-biology/trinityrnaseq: do not install fasta_tool which belongs to sci-bio...Martin Mokrejš2016-12-013-3/+3
* sci-biology/twinscan: add missing space breaking GLIB_CFLAGSMartin Mokrejš2016-12-011-1/+1
* sci-biology/kat: version bump, blocked by upstream issue #61Martin Mokrejš2016-11-302-3/+9
* sci-biology/Jannovar-bin: replaced by sci-biology/jannovar, deletingMartin Mokrejš2016-11-153-45/+0
* sci-biology/jannovar: working ebuild, although maven re-fetches 95MB of its depsMartin Mokrejš2016-11-151-8/+35
* sci-biology/VarScan: install upstream jar with *.java and *.class filesMartin Mokrejš2016-11-152-5/+11
* Revert "sci-biology/VarScan: remove a package skeleton, no sources available"Martin Mokrejš2016-11-153-0/+42
* sci-biology/VarScan-bin: use upstream binariesMartin Mokrejš2016-11-153-0/+44
* sci-biology/VarScan: remove a package skeleton, no sources availableMartin Mokrejš2016-11-153-42/+0
* sci-biology/psychopy: Fix python dependency in media-libs/opencvJustin Lecher2016-11-126-96/+3
* sci-biology/igv: bump hardcoded version of needed JAR dependencyMartin Mokrejš2016-11-111-1/+1
* sci-biology/MeV: record java deps properlyMartin Mokrejš2016-11-091-3/+8
* sci-biology/igv: fix DEPS so that ebuild+repoman are happy (but emerge compla...Martin Mokrejš2016-11-083-9/+98
* sci-biology/igv: change 'dev-java/guava:17' to 'dev-java/guava:*'Martin Mokrejš2016-11-082-3/+3
* Correct permissions and drop hidden filesJustin Lecher2016-10-292-0/+0
* Follow up cleaning of obsolete python implementationsJustin Lecher2016-10-281-1/+1
* Bulk fix of obsolete python versionsJustin Lecher2016-10-281-4/+6
* sci-biology/kat: fix SRC_URIMartin Mokrejš2016-10-172-9/+2
* sci-biology/kat: new packageMartin Mokrejš2016-10-174-0/+71
* sci-biology/mothur: shutdown QC error about IUSE=boost missingMartin Mokrejš2016-10-151-1/+2
* Merge remote-tracking branch 'github/master'Marius Brehler2016-10-1232-412/+331
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| * sci-biology/hmmer: Remove, latest version in main treeDavid Seifert2016-10-095-159/+0
| * sci-biology/consed: Remove, latest version in main treeDavid Seifert2016-10-033-107/+0
| * sci-biology/nilearn: fixed gtk testing error (#690)Horea Christian2016-10-025-5/+10
| * sci-biology/nilearn: updted EAPI and python compatibility (#684)Horea Christian2016-09-266-16/+50
| * sci-biology/psychopy: version bump (#685)Horea Christian2016-09-262-0/+51
| * sci-biology/nistats: added new dep, updated EAPI and python cmpatibility (#683)Horea Christian2016-09-261-6/+10
| * sci-biology/vcftools: remove, in main treeDavid Seifert2016-09-253-67/+0
| * sci-biology/biopython: remove, in main treeDavid Seifert2016-09-254-156/+0
| * sci-biology/bedtools: remove, in main treeDavid Seifert2016-09-253-57/+0
| * sci-biology/abyss: tweak for gcc-6, bug #594254 (#681)Sergei Trofimovich2016-09-232-0/+35
| * sci-biology/nireg:new ebuild (#680)Horea Christian2016-09-232-0/+48
| * sci-biology/nitime: new ebuild (#679)Horea Christian2016-09-234-0/+97
| * Pybrain (#677)Horea Christian2016-09-233-8/+35
* | sci-biology/consed: this version now landed main tree, removingMartin Mokrejš2016-10-043-107/+0
* | sci-biology/bedtools: rewritten ebuild landed now in main tree (bug #594994)Martin Mokrejš2016-10-033-57/+0
* | sci-biology/biopieces: re-add just landed sci-biology/idba to DEPENDencies, g...Martin Mokrejš2016-09-242-4/+4
* | sci-biology/idba: new package, needed by biopieces, github issue #381Martin Mokrejš2016-09-244-0/+81
* | sci-biology/bedtools: update HOMEPAGEMartin Mokrejš2016-09-241-1/+1
* | sci-biology/staden_doc: add new versionMartin Mokrejš2016-09-232-0/+45
* | sci-biology/mothur: remove commentMartin Mokrejš2016-09-231-1/+0