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path: root/sci-biology
Commit message (Expand)AuthorAgeFilesLines
* sci-biology/repeatmasker: improve einfo messageMartin Mokrejš2015-11-242-1/+6
* sci-biology/repeatmasker: heavily patch configure to return error codes and d...Martin Mokrejš2015-11-245-0/+238
* sci-biology/maker: added DEPENDencies on two new dev-perl/ packages added by ...Martin Mokrejš2015-11-241-4/+4
* Merge branch 'master' of ssh://github.com/gentoo-science/sciChristoph Junghans2015-11-231-1/+1
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| * Merge pull request #539 from TheChymera/patch-1Justin Lecher2015-11-231-1/+1
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| | * typoHorea Christian2015-11-211-1/+1
* | | sci-biology/ncbi-blast+-2.2.31: version bump, seems that some parts of the nc...Martin Mokrejš2015-11-225-1/+368
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* | sci-biology/trinityrnaseq: version bump but dropping KEYWORDS because we relo...Martin Mokrejš2015-11-214-0/+105
* | sci-biology/parafly: document a recent upstream bugreport from githubMartin Mokrejš2015-11-212-0/+6
* | sci-biology/maker: document opened Gentoo bugzilla ticketsMartin Mokrejš2015-11-202-3/+6
* | sci-biology/maker: depend on mpich2 when USE=mpi, add back hard DEPENDency on...Martin Mokrejš2015-11-202-9/+52
* | sci-biology/maker: respect USE=mpi, remove hard DEPENDency on repeatmasker-li...Martin Mokrejš2015-11-202-5/+16
* | sci-biology/repeatmasker-libraries: version bump and improve einfo navigation...Martin Mokrejš2015-11-204-0/+52
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* sci-biology/hmmer: add updated patchesMartin Mokrejš2015-11-202-0/+102
* sci-biology/hmmer: fix ${S} variableMartin Mokrejš2015-11-192-0/+6
* sci-biology/ffindex: install under USE=-mpi cases as wellMartin Mokrejš2015-11-192-1/+8
* sci-biology/hmmer: version bumpMartin Mokrejš2015-11-194-0/+65
* sci-biology/ffindex: add DEPEND on virtual/mpiMartin Mokrejš2015-11-192-1/+5
* sci-biology/ffindex: add optional USE=mpiMartin Mokrejš2015-11-192-2/+10
* sci-biology/ffindex: fix HOMEPAGE, version bumpMartin Mokrejš2015-11-193-4/+10
* sci-biology/TransDecoder: note that Pfam-AB was discontinuedMartin Mokrejš2015-11-192-3/+7
* sci-biology/TransDecoder: update homepageMartin Mokrejš2015-11-192-1/+5
* sci-biology/TransDecoder: install properly perl modules; fix PERL5INC paths b...Martin Mokrejš2015-11-195-157/+63
* sci-biology/BBmap: version bumpMartin Mokrejš2015-11-193-3/+8
* Merge pull request #535 from TheChymera/fslJustin Lecher2015-11-162-0/+11
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| * sci-biology/fsl: added info about updating environmentHorea Christian2015-11-142-0/+11
* | sci-biology/codonw: add original Thesis of John Peden describing codonw packa...Martin Mokrejš2015-11-153-2/+9
* | sci-biology/BBmap: version bump; apply also the UnicodeToAscii.patchMartin Mokrejš2015-11-153-1/+8
* | sci-biology/Rcorrector: add einfo() message that default kmer size 23 is subo...Martin Mokrejš2015-11-152-0/+9
* | sci-biology/SEECER: add einfo() message that default kmer size 17 is suboptimalMartin Mokrejš2015-11-152-2/+16
* | sci-biology/Rcorrector: respect CXXFLAGSMartin Mokrejš2015-11-152-1/+6
* | sci-biology/Rcorrector: new packageMartin Mokrejš2015-11-133-0/+49
* | sci-biology/jellyfish: fix filename generated by pkgconfigMartin Mokrejš2015-11-132-2/+5
* | sci-biology/SEECER: patch crappy shellscripts to at leats die on error; requi...Martin Mokrejš2015-11-133-7/+48
* | sci-biology/SEECER: remove hardcoded pathsMartin Mokrejš2015-11-133-0/+59
* | sci-biology/BBmap-34.56: restoring previous working versionMartin Mokrejš2015-11-132-0/+44
* | sci-biology/BBmap-35.66: this version needs more cleanup, upstream will make ...Martin Mokrejš2015-11-133-2/+20
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* sci-biology/BBmap: drop the call to eclipse jcompiler, added ~amd64 KEYWORDMartin Mokrejš2015-11-122-1/+5
* sci-biology/BBmap: provided bug #542700 is resolved we can use mpi.jar from o...Martin Mokrejš2015-11-122-5/+10
* sci-biology/SEECER: install also the main program wrapperMartin Mokrejš2015-11-122-1/+5
* Use dev-python/pillow directly instead of virtual/python-imagingJustin Lecher2015-11-112-2/+2
* Merge pull request #525 from TheChymera/bru2niiJustin Lecher2015-11-063-0/+78
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| * sci-biology/bru2nii: Updated USE conditional logic againHorea Christian2015-11-052-1/+4
| * sci-biology/bru2nii: updated conditional die implemntationHorea Christian2015-11-042-1/+6
| * sci-biology/bru2nii: corrcted conditional logicHorea Christian2015-11-032-1/+4
| * sci-biology/bru2nii: corrected die callsHorea Christian2015-11-032-4/+7
| * sci-biology/bru2nii: added use-flag conditioningHorea Christian2015-11-032-2/+5
| * sci-biology/bru2nii: removed testing snippetHorea Christian2015-11-032-1/+3
| * sci-biology/bru2nii: new ebuildHorea Christian2015-11-033-0/+59
* | sci-biology/fsl: new sources location (upstream removes old sources)Horea Christian2015-11-042-1/+4
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