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* sci-biology/kat: removing patches for 2.4.1 versionMartin Mokrejs2018-05-082-58/+0
* sci-biology/kat: various fixes for issue #867Fran├žois Bissey2018-05-0711-229/+308
* sci-biology/quorum: drop oldMartin Mokrejs2018-05-022-29/+0
* sci-biology/jellyfish: version bump and a few tweaksMartin Mokrejs2018-05-023-5/+4
* sci-biology/bamql: add live ebuildMartin Mokrejs2018-05-011-0/+28
* sci-biology/jellyfish: install bundled PDF manualMartin Mokrejs2018-04-233-3/+54
* sci-biology/kat: properly install python filesMartin Mokrejs2018-04-233-105/+59
* sci-biology/megahit: respect cuda USE flagMartin Mokrejs2018-04-232-6/+24
* sci-biology/SOAPdenovo2: Respect CC/CXX/CFLAGS/CXXFLAGS variablesMartin Mokrejs2018-04-233-9/+216
* sci-biology/kat: add missing DEPENDencyMartin Mokrejs2018-04-223-5/+7
* sci-biology/BlastToSam: move the -9999 ebuild to 1.1 versionMartin Mokrejs2018-04-221-5/+7
* sci-biology/samstat: version bumpMartin Mokrejs2018-04-222-14/+4
* sci-biology/kat: improve -8888 ebuildMartin Mokrejs2018-04-226-250/+132
* sci-biology/kat: remove lines commented outMartin Mokrejs2018-04-221-12/+0
* sci-biology/kat: ignore site-wide boost-build/site-config.jamMartin Mokrejs2018-04-225-6/+343
* sci-biology/kat: execute the build_boost.sh and autogen.sh logicMartin Mokrejs2018-04-222-5/+31
* sci-biology/sailfish: update comments with URLsMartin Mokrejs2018-04-222-5/+5
* sci-biology/jellyfish: install the pdf manual tooMartin Mokrejs2018-04-211-0/+1
* sci-biology/ESTate: update checksumsMartin Mokrejs2018-04-211-1/+1
* sci-biology/gatk: comment out copy&pasted commandMartin Mokrejs2018-04-211-1/+3
* sci-biology/jellyfish: SLOT jellyfish to support concurrent ver. {1,2}Martin Mokrejs2018-04-2118-49/+257
* sci-biology/trinityrnaseq: rename patch filenameMartin Mokrejs2018-04-212-2/+2
* sci-biology/trinityrnaseq: version bump (no KEYWORDS set)Martin Mokrejs2018-04-217-6/+106
* sci-biology/salmon: document install procedure issuesMartin Mokrejs2018-04-213-7/+28
* sci-biology/sailfish: fix filename with a patchMartin Mokrejs2018-04-212-3/+3
* sci-biology/sailfish: drop KEYWORDS, version bumpMartin Mokrejs2018-04-213-14/+25
* sci-biology/kat: version bumpMartin Mokrejs2018-04-214-40/+55
* sci-biology/tigmint: new packageMartin Mokrejs2018-04-213-0/+44
* sci-biology/act-bin: raise require java versionMartin Mokrejs2018-04-211-1/+1
* sci-biology/zmap: new packageMartin Mokrejs2018-04-213-0/+39
* sci-biology/act-bin: version bumpMartin Mokrejs2018-04-212-9/+11
* sci-biology/seqtools: version bumpMartin Mokrejs2018-04-212-4/+4
* sci-biology/gatk: oops, drop KEYWORDSMartin Mokrejs2018-04-211-1/+1
* sci-biology/gatk: cleanup gatk-3.8.1 and improve a bit gatk-9999Martin Mokrejs2018-04-202-26/+61
* sci-biology/gatk: version bump to 3.8-1Martin Mokrejs2018-04-204-48/+112
* sci-biology/picard: use EGIT_COMMIT to fetch by a release tagMartin Mokrejs2018-04-121-1/+1
* sci-biology/picard: do not compile testsuite by defaultMartin Mokrejs2018-04-121-1/+2
* sci-biology/picard: bring in the latest release actuallyMartin Mokrejs2018-04-122-1/+1
* sci-biology/picard: version bump (not working yet)Martin Mokrejs2018-04-123-61/+63
* sci-biology/genometools: be more explicit with lua versionMartin Mokrejs2018-04-121-1/+1
* sci-biology/genometools: add missing SLOT for luaMartin Mokrejs2018-04-121-1/+1
* sci-biology/genometools: disable building using bundled libsMartin Mokrejs2018-04-121-4/+22
* sci-biology/genometools: bump to 1.5.10Martin Mokrejs2018-04-122-1/+1
* sci-biology/genometools: bump 1.5.7 to 1.5.9Martin Mokrejs2018-04-122-4/+4
* sci-biology/proovread: Fix licenseJustin Lecher2018-04-021-1/+1
* sci-biology/tablet-bin: FIX specify an explicit slotJustin Lecher2018-04-021-5/+4
* sci-biology/pilon-bin: FIX Stale CVS header on line: 3Justin Lecher2018-04-021-2/+2
* sci-biology/atsas: Drop oldJustin Lecher2018-04-023-152/+0
* sci-biology/atsas: FIX Stale CVS header on line: 3Justin Lecher2018-04-021-1/+0
* sci-biology/proovread: call perl_domodule to install *.pm filesMartin Mokrejs2018-04-021-0/+4