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* added dep needed at build-timeHorea Christian2015-06-232-0/+4
* Revert "Gentoo does https by default now"Justin Lecher2015-06-21246-246/+246
* Gentoo does https by default nowJustin Lecher2015-06-21246-246/+246
* Merge branch 'master' of github.com:gentoo-science/sciAndrei Zavada2015-06-17595-6555/+8966
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| * sci-biology/tgicl: Fix dependency problems due to recent mask of perl-core pa...Justin Lecher2015-06-152-4/+7
| * sci-biology/swissknife: Fix dependency problems due to recent mask of perl-co...Justin Lecher2015-06-152-4/+7
| * sci-biology/manatee-igs: Fix dependency problems due to recent mask of perl-c...Justin Lecher2015-06-152-34/+38
| * sci-biology/glean: Fix dependency problems due to recent mask of perl-core pa...Justin Lecher2015-06-152-1/+5
| * sci-biology/ncbi-tools++: added upstream patch to compile against sys-libs/db...Martin Mokrejš2015-06-113-0/+120
| * more comments on the external dependenciesMartin Mokrejš2015-06-102-2/+17
| * add dependency on jhdf5; more ebuild cleanupMartin Mokrejš2015-06-102-3/+8
| * sci-biology/artemis: ebuild cleanup; officially there is not install and one ...Martin Mokrejš2015-06-093-5/+39
| * sci-biology/artemis-bin: ebuild cleanupMartin Mokrejš2015-06-092-8/+23
| * sci-biology/samtools: Updating remote-id in metadata.xmlJustin Lecher2015-06-082-0/+6
| * sci-biology/ngsview: Updating remote-id in metadata.xmlJustin Lecher2015-06-082-1/+4
| * sci-biology/perlprimer: Updating remote-id in metadata.xmlJustin Lecher2015-06-082-2/+7
| * sci-biology/bowtie: Updating remote-id in metadata.xmlJustin Lecher2015-06-082-0/+6
| * sci-biology/ngsview: Updating remote-id in metadata.xmlJustin Lecher2015-06-082-0/+6
| * sci-biology/mrsfast: Updating remote-id in metadata.xmlJustin Lecher2015-06-082-2/+7
| * sci-biology/mrfast: Updating remote-id in metadata.xmlJustin Lecher2015-06-082-2/+7
| * sci-biology/mira: Updating remote-id in metadata.xmlJustin Lecher2015-06-082-0/+6
| * sci-biology/codonw: Updating remote-id in metadata.xmlJustin Lecher2015-06-082-0/+6
| * sci-biology/bx-python: Add bitbucket to remote-id in metadata.xmlJustin Lecher2015-06-072-0/+4
| * sci-biology/Trinotate: Fix whitespacesJustin Lecher2015-06-062-2/+5
| * sci-biology/Trinotate: Add github to remote-id in metadata.xmlJustin Lecher2015-06-062-0/+6
| * sci-biology/trinityrnaseq: Add github to remote-id in metadata.xmlJustin Lecher2015-06-062-0/+6
| * sci-biology/TransDecoder: Add github to remote-id in metadata.xmlJustin Lecher2015-06-062-1/+7
| * sci-biology/pybedtools: Add github to remote-id in metadata.xmlJustin Lecher2015-06-062-0/+6
| * sci-biology/metaseq: Add github to remote-id in metadata.xmlJustin Lecher2015-06-062-0/+6
| * sci-biology/igv: Add github to remote-id in metadata.xmlJustin Lecher2015-06-062-0/+6
| * sci-biology/gffutils: Add github to remote-id in metadata.xmlJustin Lecher2015-06-062-0/+6
| * sci-biology/bedtools: Bump to EAPI=5Justin Lecher2015-06-062-1/+4
| * sci-biology/ffindex: Add github to remote-id in metadata.xmlJustin Lecher2015-06-062-0/+6
| * sci-biology/fastx_toolkit: Add github to remote-id in metadata.xmlJustin Lecher2015-06-062-1/+7
| * sci-biology/bedtools: Add github to remote-id in metadata.xmlJustin Lecher2015-06-062-0/+4
| * sci-biology/bcftools: Add github to remote-id in metadata.xmlJustin Lecher2015-06-062-0/+6
| * sci-biology/mira: version bump, note that >=gcc-4.9.1 is needed since 4.9.xMartin Mokrejš2015-06-056-0/+256
| * sci-biology/sickle: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-0/+6
| * sci-biology/sga: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-4/+9
| * sci-biology/scythe: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-2/+7
| * sci-biology/screed: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-1/+5
| * sci-biology/rum: Use perl virtuals, add missing die; use PN for tarballJustin Lecher2015-06-053-9/+10
| * sci-biology/salmon: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-0/+6
| * sci-biology/sabre: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-0/+6
| * sci-biology/rum: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-0/+6
| * sci-biology/minced: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-0/+6
| * sci-biology/lighter: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-0/+6
| * sci-biology/khmer: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-1/+5
| * sci-biology/InterMine: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-1/+6
| * sci-biology/freebayes: Add github to remote-id in metadata.xmlJustin Lecher2015-06-052-0/+6