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* sci-biology/BEP032tools: new package, add 0.0.1_alphaHorea Christian2023-08-313-0/+61
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/imagej: add 1.54f, drop 1.54dIsrael Hernandez2023-08-172-1/+1
| | | | | | Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net> Closes: https://github.com/gentoo/sci/pull/1213 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/imagej: Add unstable git versionsIsrael Hernandez2023-07-095-0/+294
| | | | | | | Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net> Co-authored-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> Closes: https://github.com/gentoo/sci/pull/1198 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/imagej: bump to 1.53tIsrael Hernandez2023-07-032-5/+5
| | | | | Closes: https://github.com/gentoo/sci/pull/1197 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/bidsschematools: add 0.7.1Horea Christian2023-05-242-0/+38
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/bidsschematools: test deselectHorea Christian2023-05-231-1/+7
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/bidsschematools: drop 0.5.1-r1Horea Christian2023-05-232-38/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/dcmstack: drop 0.8Horea Christian2023-05-222-33/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/dcmstack: add 0.9Horea Christian2023-05-222-0/+26
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/dcmstack: enable py3.11Horea Christian2023-05-221-4/+5
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/nitime: enable py3.11Horea Christian2023-05-221-1/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/nitime: add pypi upstream metadataHorea Christian2023-05-221-0/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/nitime: update SRC_URIHorea Christian2023-05-221-3/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/mappy: add 2.26Horea Christian2023-05-222-0/+17
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/mappy: add github, pypi upstream metadataHorea Christian2023-05-221-0/+4
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/mappy: update SRC_URIHorea Christian2023-05-221-4/+4
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/gemini: treecleanHorea Christian2023-05-223-61/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/bidsschematools: update SRC_URIHorea Christian2023-05-223-7/+4
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/bidsschematools: add 0.7.0Horea Christian2023-05-222-0/+42
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/bidsschematools: drop 0.4.0Horea Christian2023-05-222-38/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/MaSuRCA: version bump and hard mask until issues are fixedHorea Christian2023-05-143-3/+35
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/MaSuRCA: update HOMEPAGEHorea Christian2023-05-142-1/+4
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/rtg-tools: treecleanHorea Christian2023-05-143-79/+0
| | | | | | | dev-java/jython dependency has been removed by e4d717fb45ff9bf0ae328dccee5dd761630c3436 on ::gentoo :( Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/BlastToSam: treecleanHorea Christian2023-05-142-47/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/MeV: update upstream metadataHorea Christian2023-05-081-1/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/samri: enable py3.11Horea Christian2023-05-023-3/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/nilearn: update SRC_URIHorea Christian2023-05-023-4/+4
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/nilearn: enable py3.11Horea Christian2023-05-022-4/+4
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/bruker2nifti: enable py3.11Horea Christian2023-05-021-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/neuroconv: enable py3.11Horea Christian2023-05-021-1/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/roiextractors: enable py3.11Horea Christian2023-05-021-1/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/roiextractors: brought backHorea Christian2023-05-023-0/+57
| | | | | | This reverts commit 96c132128bcf99351d3feb2e4231e20c9946dba6. Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/neuroconv: brought backHorea Christian2023-05-023-0/+78
| | | | | | This reverts commit 3f8ff1293b126e52932e381d68d6451f65f11229. Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/ants: drop 2.4.1-r1Andrew Ammerlaan2023-05-022-75/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/roiextractors: treecleanAndrew Ammerlaan2023-05-023-57/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/neuroconv: treecleanAndrew Ammerlaan2023-05-023-78/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/samri: fix whitespace warningsAndrew Ammerlaan2023-05-023-15/+12
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/samri: drop 0.5.2Andrew Ammerlaan2023-05-022-79/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/prokka: treecleanAndrew Ammerlaan2023-05-023-52/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/polyphen: treecleanAndrew Ammerlaan2023-05-023-71/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/kraken: treecleanAndrew Ammerlaan2023-05-024-120/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/Trinotate: treecleanAndrew Ammerlaan2023-05-023-59/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/gffutils: add missing RESTRICT="!test? ( test )"Andrew Ammerlaan2023-05-021-0/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/gffutils: drop 0.10.1Andrew Ammerlaan2023-05-022-43/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/gffutils: disable py3.9Andrew Ammerlaan2023-05-022-2/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/pyfaidx: disable py3.9Andrew Ammerlaan2023-05-022-2/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/pybedtools: disable py3.9Andrew Ammerlaan2023-05-022-2/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/hisat2: disable py3.9Andrew Ammerlaan2023-05-021-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/weblogo: treecleanAndrew Ammerlaan2023-05-023-46/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/trim_galore: treecleanAndrew Ammerlaan2023-05-023-42/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>