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* Update Manifests to new hashesJustin Lecher2017-12-1082-156/+156
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Second try to clean spaces in metadata.xmlJustin Lecher2017-11-1858-400/+400
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Consistently ident with tabsJustin Lecher2017-11-1897-799/+799
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-libs/dealii: update live ebuildMatthias Maier2017-10-072-3/+13
| | | | Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-libs/gsl: bump to gsl-2.4.François Bissey2017-09-235-4/+83
| | | | | | | | | Change over to https in all ebuilds to keep repoman happy. Closes: https://github.com/gentoo/sci/pull/815 Closes: https://github.com/gentoo/sci/issues/813 Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-libs/htslib: Remove oldDavid Seifert2017-09-025-103/+0
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* sci-libs/clblas: Remove last mentions of sci-libs/acmlDavid Seifert2017-09-023-3/+0
| | | | Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-libs/acml: Already removed from main treeDavid Seifert2017-09-025-344/+0
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* sci-libs/openblas: USE flags of single-threaded version.Benda Xu2017-08-281-0/+2
| | | | | | | | When neither openmp nor threads USE flag is set, OpenBLAS should build a single-threaded version with make option USE_THREAD=0. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/openblas: fix DESTDIR and PREFIX for cmake directories.Benda Xu2017-08-254-12/+12
| | | | | | Closes: https://github.com/gentoo/sci/pull/725 Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/openblas: Bump to 0.2.20.François Bissey2017-08-258-73/+345
| | | | | | | | | | Clean up after fixing multilib wrapper issue. Use https to make repoman happy. Closes: https://github.com/gentoo/sci/pull/800 Bug: 617312 Package-Manager: Portage-2.3.6, Repoman-2.3.3
* sci-libs/nipype: added dependenciesHorea Christian2017-08-251-0/+3
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3
* sci-libs/nipy: version bumpHorea Christian2017-08-253-14/+55
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3
* sci-libs/nibabel: fixed indentationHorea Christian2017-08-252-17/+17
| | | | Package-Manager: Portage-2.3.8, Repoman-2.3.3
* sci-libs/dealii: update live ebuild to upstream changesMatthias Maier2017-08-142-3/+9
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3
* sci-libs/htslib: version bumpMartin Mokrejš2017-07-282-0/+32
| | | | | | | Keeping KEYWORDS empty because it conflicts with htslib-1.3.1 as of now unless jlec/soap proceed in some proper way. Package-Manager: Portage-2.3.6, Repoman-2.3.2
* sci-libs/trilinos: fix compilation with gcc-7Matthias Maier2017-07-142-1/+59
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.2
* sci-libs/trilinos: bugfix - change eapply_user to epatch_user for EAPI 5Matthias Maier2017-07-071-1/+1
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.2
* sci-libs/trilinos: add eapply_user to src_prepareMatthias Maier2017-07-071-0/+2
| | | | | | We'll have to migrate to EAPI 6 at some point Package-Manager: Portage-2.3.6, Repoman-2.3.2
* sci-libs/libmaus: Bump to EAPI 6Justin Lecher2017-07-072-3/+3
| | | | | Package-Manager: Portage-2.3.6-prefix, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-libs/atlas: version bump to 3.11.39Gergely Nagy2017-06-273-0/+300
| | | | | | Patch from upstream is required to build the shared library: https://sourceforge.net/p/math-atlas/bugs/260/ Closes: https://github.com/gentoo/sci/pull/794
* sci-libs/atlas: Sanitize default USE combinationJustin Lecher2017-06-263-4/+4
| | | | | | | Helps sorting out #794 Package-Manager: Portage-2.3.6-prefix, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-libs/itk: bump to 4.12.0tharvik2017-06-232-0/+137
| | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1 Closes: https://github.com/gentoo/sci/pull/792
* sci-libs/dealii: ebuild maintenanceMatthias Maier2017-06-181-2/+1
| | | | Package-Manager: Portage-2.3.6, Repoman-2.3.2
* sci-libs/acml: fix missed opencl depAndrew Savchenko2017-06-101-0/+98
| | | | | | | | | | | | 1) acml is linked with opencl support: libclFFT.so.2.3.1, libclBLAS.so.2.3.0, libacml_bridge.so.1.1.28: libOpenCL.so.1 => not found 2) update to EAPI 6. Package-Manager: Portage-2.3.6, Repoman-2.3.2 Signed-off-by: Andrew Savchenko <bircoph@gentoo.org>
* sci-libs/openblas: remove redundant libdir from Libs in .pcBenda Xu2017-06-061-1/+1
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/cblas-reference: configure BLAS_LIBRARIES implicitlyBenda Xu2017-06-052-2/+0
| | | | | | | | | sci-libs/lapack-reference: configure BLAS_LIBRARIES implicitly cmake option USE_OPTIMIZED_BLAS uses pkg-config to figure out BLAS_LIBRARIES in Gentoo FindBLAS cmake patch. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/cblas-reference: guide cmake to find eselected blasBenda Xu2017-06-051-1/+1
| | | | | | | | | | same rational as commit e6181c66eac for lapack-reference. alternative.eclass blas.pc gives -L"${libdir}" -lxxx. The bare quotes confuses cmake parser. Escaping the quotes is tedious, but solves the problem. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/lapack-reference: guide cmake to find eselected blasBenda Xu2017-06-051-1/+1
| | | | | | | | alternative.eclass blas.pc gives -L"${libdir}" -lxxx. The bare quotes confuses cmake parser. Escaping the quotes is tedious, but solves the problem. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/pagmo: bump to pagmo2 and EAPI 6.Benda Xu2017-06-042-18/+18
| | | | | | Update the use flags. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/openblas: fix '??die' typos.Benda Xu2017-06-031-4/+4
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-libs/gmsh: Drop oldMarius Brehler2017-05-292-90/+0
| | | | | | Required petsc versions were removed from the overlay. Package-Manager: Portage-2.3.5, Repoman-2.3.1
* sci-libs/libsc: Removed, moved to ::gentooMatthias Maier2017-05-265-254/+0
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* sci-libs/p4est: Remove, moved to ::gentooMatthias Maier2017-05-265-343/+0
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* sci-libs/libStatGen: version bump, use ${PV}Martin Mokrejš2017-05-253-1/+23
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/dealii: add support for slepcMatthias Maier2017-05-253-3/+10
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/dealii: update metadataMatthias Maier2017-05-251-1/+1
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/dealii: remove erroneous package versionMatthias Maier2017-05-253-5/+2
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/trilinos: fix installation pathsMatthias Maier2017-05-241-0/+5
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/fast5: remove blank lineMartin Mokrejš2017-05-231-1/+0
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/fast5: removing KEYWORDs until src_install is fixedMartin Mokrejš2017-05-231-1/+18
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/fast5: new packageMartin Mokrejš2017-05-234-0/+65
| | | | | | Will be needed for sci-biology/nanopolish (once ebuild arrives in sci tree). Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/htslib: note version lib along the SLOTMartin Mokrejš2017-05-211-1/+1
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/pfft: Fix HOMPAGE and SRC_URIJustin Lecher2017-05-133-6/+6
| | | | | | | Fixes gentoo/sci#786 Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* longdescription changeAlessandro Barbieri2017-05-131-11/+6
| | | | | now same as upstream and downstream Closes: https://github.com/gentoo/sci/pull/785
* license now same as upstream and downstreamAlessandro Barbieri2017-05-131-1/+1
| | | | Closes: https://github.com/gentoo/sci/pull/785
* sci-libs/iRODS: skeleton for a new packageMartin Mokrejš2017-04-303-0/+33
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/htslib-plugins: samtools-1.4 moved some code under this packageMartin Mokrejš2017-04-303-0/+28
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/htslib: version bumpMartin Mokrejš2017-04-303-1/+40
| | | | | @soap: Keeping empty KEYWORDS Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-libs/openblas: Drop ppc64 supportJustin Lecher2017-04-302-2/+2
| | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>