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* sci-libs/matc: remove pack, included in elmer-femAndrew Ammerlaan2021-01-305-112/+27
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/optpp: EAPI bump, fix file collisionAndrew Ammerlaan2021-01-301-13/+15
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/pfft: version bump, EAPI bumpAndrew Ammerlaan2021-01-303-30/+20
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/starparse: EAPI bump, add version 0.9, add keywordsAndrew Ammerlaan2021-01-303-74/+8
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/vxl: version bump, EAPI bump, add keywordsAndrew Ammerlaan2021-01-303-16/+24
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/wannier90: version bump, EAPI bumpAndrew Ammerlaan2021-01-303-95/+16
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/xblas: correct soname variableAndrew Ammerlaan2021-01-301-1/+1
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/xblas: EAPI bumpAndrew Ammerlaan2021-01-301-5/+6
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/clfft: EAPI bump, add doc buildingAndrew Ammerlaan2021-01-305-148/+40
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/ciftilib: version bump, EAPI bump, cmake-utils-->cmakeAndrew Ammerlaan2021-01-303-23/+7
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/cgnstools: remove pack, replace by cgnslib[tools]Andrew Ammerlaan2021-01-307-443/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/xraylib: do REQUIRED_USE correctlyAndrew Ammerlaan2021-01-291-2/+4
| | | | | | | oops, clearly it's time to go to bed now Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/xraylib: use docinto/dodoc instead of insintoAndrew Ammerlaan2021-01-291-9/+9
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/xraylib: version bump, EAPI bump, add ruby and lua targetsAndrew Ammerlaan2021-01-294-168/+95
| | | | | | | | drop java support, uses gradle now which is not supported by portage at the moment Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/asl: fix manifestAndrew Ammerlaan2021-01-291-14/+0
| | | | | | | | okay I think I found out why this keeps happening, and it should be fixed now Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/asl: camke-utils --> cmake, fix compilationAndrew Ammerlaan2021-01-294-63/+38
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/pytorch: correct protobuf-python dependencyAndrew Ammerlaan2021-01-241-1/+1
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/pytorch: bump to 1.7.1.Benda Xu2021-01-249-0/+413
| | | | | | | | | | | | | | | | | | | Add ROCm support for AMD GPUs. Remove fine-grained BLAS flags, use a general USE=blas and rely on eselect-ldso for runtime switch of blas libraries. merge USE=numpy into USE=python. Suggested-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Bug: https://bugs.gentoo.org/650804 Bug: https://github.com/gentoo/gentoo/pull/10724 Closes: https://github.com/justxi/rocm/issues/133 Closes: https://github.com/gentoo/sci/issues/1039 Closes: https://github.com/gentoo/sci/issues/1011 Package-Manager: Portage-3.0.12, Repoman-3.0.1 RepoMan-Options: --force Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/miopen: quote variableAndrew Ammerlaan2021-01-241-1/+1
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/miopen: unconditional use HIP.Benda Xu2021-01-211-1/+1
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.1 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/miopen: high performance machine learning primitives.Benda Xu2021-01-213-0/+72
| | | | | | | | | Bug: https://bugs.gentoo.org/650804 Bug: https://github.com/gentoo/gentoo/pull/10724 Suggested-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Suggested-by: Wilfried Holzke <gentoo@holzke.net> Package-Manager: Portage-3.0.12, Repoman-3.0.1 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocBLAS: AMD library for BLAS on the ROCm platform.Benda Xu2021-01-214-0/+130
| | | | | | | | | | | | | To be considered landing on ::gentoo when dev-util/Tensile is available. Bug: https://bugs.gentoo.org/650804 Bug: https://github.com/gentoo/gentoo/pull/10724 Suggested-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Suggested-by: Wilfried Holzke <gentoo@holzke.net> Bug: https://github.com/justxi/rocm/issues/133 Package-Manager: Portage-3.0.12, Repoman-3.0.1 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/spams-python: bump python targetsAndrew Ammerlaan2021-01-202-5/+6
| | | | | | | fails to compile without openblas Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/nipype: drop old failed REQUIRED_USE: py_targets_py3_7Andrew Ammerlaan2021-01-203-139/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/nipy: drop old: failed REQUIRED_USE: py_targets_py3_7Andrew Ammerlaan2021-01-202-41/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/arrayfire: update homepageAndrew Ammerlaan2021-01-203-5/+5
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/xblas: update HOMEPAGEAndrew Ammerlaan2021-01-191-3/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/xraylib: cleanup metadataAndrew Ammerlaan2021-01-191-2/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/wannier90: add RESTRICT="!test? ( test )"Andrew Ammerlaan2021-01-192-2/+6
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/superlu_dist: add RESTRICT="!test? ( test )"Andrew Ammerlaan2021-01-191-0/+1
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/starparse: add RESTRICT="!test? ( test )"Andrew Ammerlaan2021-01-191-1/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/simpleitk: add python depsAndrew Ammerlaan2021-01-191-0/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/rdkit: add ${PYTHON_DEPS}Andrew Ammerlaan2021-01-191-1/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/lwpr: use docinto instead of insinto for docsAndrew Ammerlaan2021-01-191-2/+2
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/labbookdb: properly name tarballAndrew Ammerlaan2021-01-192-3/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/jhdf5: depend on unzipAndrew Ammerlaan2021-01-191-2/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/itk: add python depsAndrew Ammerlaan2021-01-193-13/+15
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/geom: cleanup metadataAndrew Ammerlaan2021-01-191-2/+0
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/arrayfire: version bump to 3.8.0Aisha Tammy2021-01-192-0/+97
| | | | | Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-libs/ccif: version bump 0.4, fix fetchAndrew Ammerlaan2021-01-182-5/+4
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/etsf_io: fix fetchAndrew Ammerlaan2021-01-183-44/+7
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/fdlibm: fix fetch, add patchAndrew Ammerlaan2021-01-184-58/+54
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/fgsl: version bump 1.3.0, fix fetch, fix homepageAndrew Ammerlaan2021-01-184-88/+38
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/lwpr: fix homepage, EAPI bumpAndrew Ammerlaan2021-01-181-22/+19
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/modglue: remove pack, obsolete, lib is no longer required for Cadabra>2Andrew Ammerlaan2021-01-184-172/+0
| | | | | | | | | | | From: https://github.com/kpeeters/modglue This is the public repository of the Modglue library, made available for those people who want to build Cadabra 1.x from the source at http://github.com/kpeeters/cadabra. It is not necessary to build Cadabra 2.x, and this library is no longer maintained. Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/superlu_dist: version bump 6.4.0, fix fetchAndrew Ammerlaan2021-01-184-152/+42
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/amber99sbnmr-ildn: fix fetch, fix homepageAndrew Ammerlaan2021-01-181-4/+4
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/amber99sbnmr: fix fetch, fix homepageAndrew Ammerlaan2021-01-182-8/+5
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/amber99sb_phipsi: fix fetch, fix homepageAndrew Ammerlaan2021-01-182-6/+5
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/pybids: add version 0.12.4Andrew Ammerlaan2021-01-152-0/+36
| | | | | | | cleaned up testing Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>