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* sci-libs/nipype: purged dangling etelemetry requirementHEADmasterHorea Christian8 days1-1/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: removed superfluous pytest argumentsHorea Christian2022-07-121-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: removed superfluous die callHorea Christian2022-07-121-2/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/itk: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-122-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: EAPI and PYTHON_COMPAT bump, test fixHorea Christian2022-07-112-4/+41
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipy: removed stale live ebuildHorea Christian2022-07-111-54/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipy: EAPI/PYTHON_COMPAT bump and restricted testsHorea Christian2022-07-113-5/+60
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/simpleitk: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-111-3/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: dropped deprecated live ebuildHorea Christian2022-07-111-37/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pybids: dropped version with missing sourceHorea Christian2022-07-112-37/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pybids: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-114-29/+15
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: dropped version with missing sourcesHorea Christian2022-07-112-43/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-113-8/+8
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/bids-validator: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-111-3/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/labbookdb: PYHTON_COMPAT bump 3.10Horea Christian2022-07-111-3/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: enable py3.10 and disable py3.7Sam James2022-07-071-3/+8
| | | | | | See https://projects.gentoo.org/python/guide/distutils.html#running-tests-with-virtualx re virtx. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/torchvision: depend on pytorch[cuda?]Andrew Ammerlaan2022-07-051-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: port to ::gentoo version of pytorchAndrew Ammerlaan2022-07-031-4/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: moved to ::gentooAndrew Ammerlaan2022-07-0329-1164/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/arpack: new package, add 3.8.0_p20220604Alessandro Barbieri2022-06-123-0/+131
| | | | | | Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/sci/pull/1147 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/HDF5Plugin-Zstandard: avoid changing envYuyi Wang2022-06-091-7/+1
| | | | | | | | | | | | This patch syncs with gentoo/gentoo@8e16e74. As the default plugin directory is set to the right value, we don't need to specify the HDF5_PLUGIN_PATH environment variable. This will make our environment clear and less hacky. Closes: https://github.com/gentoo/sci/pull/1146 Signed-off-by: Yuyi Wang <Strawberry_Str@hotmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* */*: virtual/jpeg deprecationAndrew Ammerlaan2022-05-022-2/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/superlu_dist: drop masked packageAndrew Ammerlaan2022-05-023-69/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: update to 1.10.2Miezhiko2022-02-242-1/+1
| | | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Closes: https://github.com/gentoo/sci/pull/1145 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/spyking-circus: bump to 1.1.0Andrew Ammerlaan2022-01-312-8/+5
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/clfft: remove underscore from use flagAndrew Ammerlaan2022-01-263-9/+9
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pg2plplot: bump to 5.13.1Andrew Ammerlaan2022-01-252-11/+12
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libsufr: bump to 0.7.7Andrew Ammerlaan2022-01-252-5/+4
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/aocl-libm: bump to 3.1.0Andrew Ammerlaan2022-01-252-15/+12
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libflame-amd: bump to 3.1Andrew Ammerlaan2022-01-252-19/+10
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libflame-amd: drop liveAndrew Ammerlaan2022-01-251-55/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/iRODS: bump to 4.2.11Andrew Ammerlaan2022-01-243-21/+78
| | | | | | | Finally the configure phase passes Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/rdkit: bump to 2021.09.4Andrew Ammerlaan2022-01-245-120/+81
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/jhdf5: remove old java packageAndrew Ammerlaan2022-01-233-50/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: revbump as per previous commitHorea Christian2022-01-181-0/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pytorch: removed deprecated sys-fabric/libibverbs depHorea Christian2022-01-181-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pydicom: update to 2.2.2, py3.10 supportMiezhiko2022-01-182-0/+28
| | | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Miezhiko <Miezhiko@gmail.com> Closes: https://github.com/gentoo/sci/pull/1139 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/mlpack: fix pytest-runner errorAndrew Ammerlaan2022-01-151-4/+10
| | | | | | Closes: https://github.com/gentoo/sci/issues/1086 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* Fixed thrust include path for rocm platformAntonin Riha2022-01-141-0/+1
| | | | | | Signed-off-by: Antonín Říha <riha.antonin@outlook.com> Closes: https://github.com/gentoo/sci/pull/1133 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: cleanup oldAndrew Ammerlaan2022-01-125-957/+0
| | | | | | | | | | | | we finally have a working version of this again Closes: https://github.com/gentoo/sci/issues/1075 Closes: https://github.com/gentoo/sci/issues/1073 Closes: https://github.com/gentoo/sci/issues/1070 Closes: https://github.com/gentoo/sci/issues/953 Closes: https://bugs.gentoo.org/789807 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/itk: fixed missing limits issue for newer GCCHorea Christian2022-01-094-12/+23
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pytorch: fixes for cuda USE flag, nccl updateMiezhiko2021-12-273-3/+42
| | | | | | Signed-off-by: Miezhiko <Miezhiko@gmail.com> Closes: https://github.com/gentoo/sci/pull/1132 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: fix dep on pytorchAndrew Ammerlaan2021-12-261-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --force Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: use python-single-r1Andrew Ammerlaan2021-12-261-2/+7
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --force Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: use python-single-r1Andrew Ammerlaan2021-12-261-2/+9
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: new packageAndrew Ammerlaan2021-12-263-0/+57
| | | | | | | Closes: https://github.com/gentoo/sci/issues/943 Closes: https://github.com/gentoo/sci/pull/944 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: add clhpp patch, fix setuptools depAndrew Ammerlaan2021-12-262-3/+57
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: fix python build with >=setuptools-59.6YiyangWu2021-12-262-0/+94
| | | | | | | | | Reference: https://github.com/pytorch/pytorch/commit/07767569c964552702bf374da753212eb9cde327 Reference: https://github.com/gentoo/sci/pull/1123#issuecomment-999597677 Package-Manager: Portage-3.0.22, Repoman-3.0.3 Closes: https://github.com/gentoo/sci/pull/1130 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/pytorch: QA fixesAndrew Ammerlaan2021-12-221-21/+10
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pytorch: fix python and update rocm supportYiyangWu2021-12-223-18/+74
| | | | | | | | | | | | | | | | | Other changes: 1. Pytorch seems to be work fine with different version of protobuf, so no need to specify 0/30; however when protobuf version changed torch should be rebuilt. 2. BUILD_NAMEDTENSOR is not an option now 3. Verbose mode for rm in src_install Package-Manager: Portage-3.0.22, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Closes: https://github.com/gentoo/sci/pull/1123 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>