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* sci-libs/ciftilib: fixed boost version checkingHEADmasterHorea Christian46 hours2-0/+33
| | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/fox: add inherit fortran-2Lucas Mitrak2021-06-011-2/+2
| | | | | | | | | | | | | | | | | | | Currently, sci-libs/fox does not require a fortran compiler to be installed. If sci-libs/fox is emerged without the fortran compiler, the configure phase will check for a fortran compiler, and the configure phase will fail. For example, the hardened profile disables the fortran USE flag in sys-devel/gcc, so sci-libs/fox will fail. With this commit, sci-libs/fox will require a fortran compiler to be installed. Without this commit, sci-libs/fox will fail on any system which does not have the fortran compiler, which by default is all hardened profiles. This commit was tested in a docker image with dev-util/ebuildtester. This commit was written, tested, and submitted by Lucas Mitrak. Closes: https://bugs.gentoo.org/757771 Signed-off-by: Lucas Mitrak <lucas@lucasmitrak.com> Closes: https://github.com/gentoo/sci/pull/1083 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/fox: DEPEND of fortran USE flag for gccLucas Mitrak2021-06-011-0/+2
| | | | | | | | | | | | | | | | | | | | | * add a DEPEND which will require the fortran USE flag in sys-devel/gcc Currently, sci-libs/fox does not require sys-devel/gcc to have the fortran USE flag set. If sci-libs/fox is emerged without the fortran USE flag, the configure phase will check for a fortran compiler, and the configure phase will fail. By default, the hardened profile disables the fortran USE flag in sys-devel/gcc, so sci-libs/fox will fail. With this commit, sci-libs/fox depends on sys-devel/gcc having a the fortran USE flag set. Without this commit, sci-libs/fox will fail on any system which does not have the fortran USE flag in sys-devel/gcc, which by default is all hardened profiles. This commit was tested in a docker image with dev-util/ebuildtester. This commit was written, tested, and submitted by Lucas Mitrak. Closes: https://bugs.gentoo.org/757771 Signed-off-by: Lucas Mitrak <lucas@lucasmitrak.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/mlpack: fix dependency.missingslotAndrew Ammerlaan2021-06-012-2/+2
| | | | | Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/nipy: bump PYTHON_COMPAT in 9999 to match latest releaseAndrew Ammerlaan2021-06-011-1/+1
| | | | | | Bug: https://bugs.gentoo.org/793617 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/ensmallen: version bump to 2.16.2Aisha Tammy2021-05-212-0/+29
| | | | | Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-libs/scikits_video: drop eutilsAndrew Ammerlaan2021-05-081-2/+2
| | | | | Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/pytorch: require 0 or oneof (cuda rocm)Raouf Bencheraiet2021-04-201-1/+1
| | | | | | | instead of exactly oneof (cuda rocm) Signed-off-by: Raouf Bencheraiet <foufou33@gmail.com> Closes: https://github.com/gentoo/sci/pull/1078 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-libs/pfft: fix MultipleKeywordsLinesAndrew Ammerlaan2021-03-202-2/+0
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/libcgnsoo: remove masked packageAndrew Ammerlaan2021-03-193-38/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/aocl-libm: fix MisplacedVariableAndrew Ammerlaan2021-03-191-2/+2
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/libStatGen: fix manifestAndrew Ammerlaan2021-03-161-1/+1
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/itk: metadata indentationHorea Christian2021-03-131-5/+5
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/itk: added optional USE flagHorea Christian2021-03-132-1/+3
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/miopen: fix dep on dev-libs/halfAndrew Ammerlaan2021-03-131-4/+5
| | | | | | | | also add bdep on command in src_install Closes: https://github.com/gentoo/sci/issues/1064 Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/itk: fix docinto pathAndrew Ammerlaan2021-03-041-1/+1
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/itk: try to fix doc buildingAndrew Ammerlaan2021-03-043-22/+21
| | | | | | | where do they go? currently fails to install with USE="doc" Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/cs-rosetta-db: version bump 2.01Andrew Ammerlaan2021-03-042-9/+9
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/fox: EAPI bumpAndrew Ammerlaan2021-03-043-18/+17
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/geom: cleanup oldAndrew Ammerlaan2021-03-042-40/+0
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/geom: version bump 6.3.1.8Andrew Ammerlaan2021-03-042-0/+38
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/libStatGen: cleanup oldAndrew Ammerlaan2021-03-043-44/+0
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/libStatGen: version bump 1.0.15Andrew Ammerlaan2021-03-042-0/+31
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/mesquite: EAPI bumpAndrew Ammerlaan2021-03-041-4/+1
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/zarja: drop oldAndrew Ammerlaan2021-03-042-41/+0
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/zarja: version bump 2.2.0, EAPI bumpAndrew Ammerlaan2021-03-042-0/+28
| | | | | Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/flexiblas: add alternate BLAS/LAPACK switchAisha Tammy2021-02-264-0/+118
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-libs/ensmallen: version bump to 2.16.0Aisha Tammy2021-02-252-0/+29
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* */*: drop obsolete python_targets_python3_6Sam James2021-02-1214-14/+14
| | | | | | | | Hopefully got them all: * find . | grep -i .ebuild | xargs perl -p -i -e "s/6\.\.9/7\.\.9/" * find . | grep -i .ebuild | xargs perl -p -i -e "s/3_{6,7/3_{7/" Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/simpleitk: drop ChangeLogSam James2021-02-121-10/+0
| | | | | | | | ::gentoo dropped these post-git migration, but this contained an invalid email anyway. Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/simpleitk: fix incorrect non-slotted Lua dependencySam James2021-02-121-5/+3
| | | | | | | | | | | | | * We let the eclass figure out the dependencies on Lua for us via ${LUA_DEPS}. Hardcoding a single Lua version is contradictory. * If we were to depend on a single version, we should still let the Lua eclass do this, but we should depend on the slotted ebuild (e.g. :5.1) if we are to do it at all, not the unslotted :0. Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocBLAS: get rid of --rocm-path.Benda Xu2021-02-071-1/+1
| | | | | | | | The new revision of llvm-roc has a correct default for --rocm-path. Bug: https://bugs.gentoo.org/769005 Package-Manager: Portage-3.0.12, Repoman-3.0.1 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocBLAS: depend on Tensile-4.0.0-r1 and newer.Benda Xu2021-02-072-0/+108
| | | | | | | | clean up the ebuild. Bug: https://github.com/justxi/rocm/issues/133 Package-Manager: Portage-3.0.12, Repoman-3.0.1 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/cs-rosetta-db: use httpsAndrew Ammerlaan2021-02-051-9/+9
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/mesquite: update homepageAndrew Ammerlaan2021-02-041-2/+2
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/jhdf5: version bump, EAPI bump, add keywordsAndrew Ammerlaan2021-02-043-27/+38
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/htslib-plugins: version bump, EAPI bumpAndrew Ammerlaan2021-02-042-5/+4
| | | | | | | no keywords because dep iRODS doesn't have any Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/blastdb: remove empty packAndrew Ammerlaan2021-02-042-34/+0
| | | | | | | only pulls in ncbi-tools++ and updates the blastdb nothing depends on this, hasn't been touched since 2014 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/pytorch: add missing RESTRICT="!test? ( test )"Andrew Ammerlaan2021-01-302-1/+1
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/nipy: remove redundant long descriptionAndrew Ammerlaan2021-01-301-3/+0
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/libflame-amd: remove nonexistent blockerAndrew Ammerlaan2021-01-302-8/+4
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/fgsl: remove short long descriptionAndrew Ammerlaan2021-01-301-1/+0
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/elmer-hutiter: remove pack, included in elmer-fem nowAndrew Ammerlaan2021-01-305-126/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/elmer-eio: remove pack, included in elmer-fem nowAndrew Ammerlaan2021-01-305-120/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/iRODS: version bump, EAPI bumpAndrew Ammerlaan2021-01-302-8/+7
| | | | | | | | | this is still a mess, it wants clang-6 in /opt/ and clang:6 is no longer in ::gentoo. But maybe it can be patched? Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/libmatheval: version bump, EAPI bumpAndrew Ammerlaan2021-01-302-7/+3
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/matc: remove pack, replace by elmer-femAndrew Ammerlaan2021-01-305-87/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/matc: remove pack, included in elmer-femAndrew Ammerlaan2021-01-305-112/+27
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/optpp: EAPI bump, fix file collisionAndrew Ammerlaan2021-01-301-13/+15
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
* sci-libs/pfft: version bump, EAPI bumpAndrew Ammerlaan2021-01-303-30/+20
| | | | | Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>