From 048f49ddebd47dfe85fdffad7ec869913a6ccec7 Mon Sep 17 00:00:00 2001
From: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed, 7 Jan 2015 23:30:38 +0100
Subject: Initial ebuild

---
 sci-biology/SEECER/ChangeLog           | 10 ++++++++++
 sci-biology/SEECER/Manifest            |  2 ++
 sci-biology/SEECER/SEECER-0.1.3.ebuild | 33 +++++++++++++++++++++++++++++++++
 sci-biology/SEECER/metadata.xml        |  9 +++++++++
 4 files changed, 54 insertions(+)
 create mode 100644 sci-biology/SEECER/ChangeLog
 create mode 100644 sci-biology/SEECER/Manifest
 create mode 100644 sci-biology/SEECER/SEECER-0.1.3.ebuild
 create mode 100644 sci-biology/SEECER/metadata.xml

diff --git a/sci-biology/SEECER/ChangeLog b/sci-biology/SEECER/ChangeLog
new file mode 100644
index 000000000..1e865a6ac
--- /dev/null
+++ b/sci-biology/SEECER/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/SEECER
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*SEECER-0.1.3 (07 Jan 2015)
+
+  07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +SEECER-0.1.3.ebuild, +metadata.xml:
+  initial ebuild
+
diff --git a/sci-biology/SEECER/Manifest b/sci-biology/SEECER/Manifest
new file mode 100644
index 000000000..72d9cd2b8
--- /dev/null
+++ b/sci-biology/SEECER/Manifest
@@ -0,0 +1,2 @@
+DIST SEECER-0.1.3.tar.gz 9457477 SHA256 bfe7885170810e99d0b2459fa84b94f6695457c393f6153c8d74db15a688e2c2 SHA512 7e7c4a8525ffd9104402d7eb10f7fd99648214dfdc6dc2cd40ed22a641dbf80ddc2e5945cdc5d3a8776f781e069c5490825f3c132843d2ea6ce26440f84e07d3 WHIRLPOOL af60f230f014a7231b0a4b5ac41056f193dabdd8af57b4d142a2f0f005d6d613526c4b5220c790437382923b386481ac45ef2a243d8f7b44323be1fb87a3a723
+DIST manual.pdf 233688 SHA256 f8f1bbc6053158ed080545692dbd9db47a8429d0900d5df9109e6a9e55295ee6 SHA512 735132309c00ff5b46d9495e0b248727bb7fac98fff830ce0f9b9d6620e592c65b4850945157706fafcf81b396fc52071bd7671cb31ea20dfcb959b16b51cab6 WHIRLPOOL 38d8fe7d904c155728c12a26fee79b64ff9695be616babfc38f83c17c03a1d3c396834447bc97e8345e770984c138d09dc0bfc9d8eef1e5dc037170711d78811
diff --git a/sci-biology/SEECER/SEECER-0.1.3.ebuild b/sci-biology/SEECER/SEECER-0.1.3.ebuild
new file mode 100644
index 000000000..7f3833ea7
--- /dev/null
+++ b/sci-biology/SEECER/SEECER-0.1.3.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Error corrector for RNA-Seq reads"
+HOMEPAGE="http://sb.cs.cmu.edu/seecer/"
+SRC_URI="http://sb.cs.cmu.edu/seecer/downloads/SEECER-0.1.3.tar.gz
+	http://sb.cs.cmu.edu/seecer/downloads/manual.pdf"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="sci-libs/gsl
+	sci-biology/seqan
+	sci-biology/jellyfish"
+RDEPEND="${DEPEND}"
+
+S="${S}"/SEECER
+
+# doh, it install /usr/bin/seecer (note the lowercase letters)
+
+# checking for x86_64-pc-linux-gnu-gcc option to support OpenMP... -fopenmp
+# 
+# Uses:
+#         libgomp.so.1 => /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/libgomp.so.1 (0x00007f7853faf000)
+
+
+# dobin bin/run_seecer.sh
+# dodoc "${DISTDIR}"/manual.pdf
diff --git a/sci-biology/SEECER/metadata.xml b/sci-biology/SEECER/metadata.xml
new file mode 100644
index 000000000..2bc893037
--- /dev/null
+++ b/sci-biology/SEECER/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>
-- 
cgit v1.2.3-65-gdbad