From 16ae2a3560b2590754642902a95b53b98b90e63a Mon Sep 17 00:00:00 2001
From: Reinis Danne <rei4dan@gmail.com>
Date: Thu, 26 Sep 2013 20:51:49 +0300
Subject: Add sci-chemistry/openbabel-java live ebuild

---
 sci-chemistry/openbabel-java/ChangeLog             | 10 ++++
 sci-chemistry/openbabel-java/metadata.xml          | 12 +++++
 .../openbabel-java/openbabel-java-9999.ebuild      | 63 ++++++++++++++++++++++
 3 files changed, 85 insertions(+)
 create mode 100644 sci-chemistry/openbabel-java/ChangeLog
 create mode 100644 sci-chemistry/openbabel-java/metadata.xml
 create mode 100644 sci-chemistry/openbabel-java/openbabel-java-9999.ebuild

diff --git a/sci-chemistry/openbabel-java/ChangeLog b/sci-chemistry/openbabel-java/ChangeLog
new file mode 100644
index 000000000..36777b53b
--- /dev/null
+++ b/sci-chemistry/openbabel-java/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/openbabel-java
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*openbabel-java-9999 (24 Sep 2013)
+
+  24 Sep 2013; Reinis Danne <rei4dan@gmail.com> +openbabel-java-9999.ebuild,
+  +metadata.xml:
+  Add live ebuild.
+
diff --git a/sci-chemistry/openbabel-java/metadata.xml b/sci-chemistry/openbabel-java/metadata.xml
new file mode 100644
index 000000000..13ecd9d5d
--- /dev/null
+++ b/sci-chemistry/openbabel-java/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+  <longdescription>
+    Open Babel is a chemical toolbox designed to speak the many languages of
+    chemical data. It's an open, collaborative project allowing anyone to
+    search, convert, analyze, or store data from molecular modeling, chemistry,
+    solid-state materials, biochemistry, or related areas. This package enables
+    to access Open Babel library from Java (Scala, etc.) programs.
+  </longdescription>
+</pkgmetadata>
diff --git a/sci-chemistry/openbabel-java/openbabel-java-9999.ebuild b/sci-chemistry/openbabel-java/openbabel-java-9999.ebuild
new file mode 100644
index 000000000..fc7ca33e3
--- /dev/null
+++ b/sci-chemistry/openbabel-java/openbabel-java-9999.ebuild
@@ -0,0 +1,63 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit cmake-utils eutils java-pkg-2 git-2
+
+DESCRIPTION="Java bindings for OpenBabel"
+HOMEPAGE="http://openbabel.sourceforge.net/"
+EGIT_REPO_URI="https://github.com/openbabel/openbabel.git"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+COMMON_DEP="~sci-chemistry/openbabel-${PV}"
+
+DEPEND="${COMMON_DEP}
+	>=dev-lang/swig-1.3.29
+	>=virtual/jdk-1.7"
+RDEPEND="${COMMON_DEP}
+	>=virtual/jre-1.7"
+
+CMAKE_IN_SOURCE_BUILD=1
+
+src_configure() {
+	local mycmakeargs="${mycmakeargs}
+		-DCMAKE_INSTALL_RPATH=
+		-DBINDINGS_ONLY=ON
+		-DBABEL_SYSTEM_LIBRARY=${EPREFIX}/usr/$(get_libdir)/libopenbabel.so
+		-DOB_MODULE_PATH=${EPREFIX}/usr/$(get_libdir)/openbabel/${PV}
+		-DLIB_INSTALL_DIR=${S}/$(get_libdir)
+		-DJAVA_BINDINGS=ON
+		-DJAVA_INCLUDE_PATH=${EPREFIX}$(java-config-2 -o)/include
+		-DJAVA_INCLUDE_PATH2=${EPREFIX}$(java-config-2 -o)/include/linux
+		-DJAVA_AWT_INCLUDE_PATH=${EPREFIX}$(java-config-2 -o)/include
+		-DJAVA_AWT_LIBRARY=${EPREFIX}$(java-config-2 -o)/jre/lib/${ABI}/libjawt.so
+		-DJAVA_JVM_LIBRARY=${EPREFIX}$(java-config-2 -o)/jre/lib/${ABI}/server/libjvm.so
+		-DRUN_SWIG=ON"
+
+	cmake-utils_src_configure
+}
+
+src_compile() {
+	cmake-utils_src_make bindings_java
+}
+
+src_test() {
+	cd scripts/java || die
+	einfo "Running test: ${S}/scripts/java/OBTest.java"
+	CLASSPATH="openbabel.jar" LD_LIBRARY_PATH="${S}/$(get_libdir)" javac OBTest.java || die
+	CLASSPATH=".:openbabel.jar" LD_LIBRARY_PATH="${S}/$(get_libdir)" java OBTest || die
+}
+
+src_install() {
+	# Let cmake take care of RPATH setting and the like
+	cmake -DCOMPONENT=bindings_java -P cmake_install.cmake
+
+	java-pkg_dojar "${S}/$(get_libdir)/openbabel.jar"
+	java-pkg_doso "${S}/$(get_libdir)/libopenbabel_java.so"
+}
-- 
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