From 42ce5293f70fbb7a48f81f1a30bf9ba2d029b6c1 Mon Sep 17 00:00:00 2001 From: Martin Mokrejs Date: Wed, 6 Jun 2018 10:09:35 +0200 Subject: sci-biology/trimmomatic: version bump Package-Manager: Portage-2.3.40, Repoman-2.3.9 --- sci-biology/trimmomatic/Manifest | 4 +-- sci-biology/trimmomatic/trimmomatic-0.36.ebuild | 35 ------------------------- sci-biology/trimmomatic/trimmomatic-0.38.ebuild | 35 +++++++++++++++++++++++++ 3 files changed, 37 insertions(+), 37 deletions(-) delete mode 100644 sci-biology/trimmomatic/trimmomatic-0.36.ebuild create mode 100644 sci-biology/trimmomatic/trimmomatic-0.38.ebuild diff --git a/sci-biology/trimmomatic/Manifest b/sci-biology/trimmomatic/Manifest index 93bd05423..ca56aa644 100644 --- a/sci-biology/trimmomatic/Manifest +++ b/sci-biology/trimmomatic/Manifest @@ -1,2 +1,2 @@ -DIST Trimmomatic-Src-0.36.zip 106375 BLAKE2B 890f4964c48c681640c2c44e271847bbe6f3f13995054a7ac71d20892742e2935eae0d38d3797be11568d5fef57307ff346366af5227935f2ee90e934023a6d8 SHA512 9cc962361253f9e248324ba98a277a74672858b1adc31266db203e6a549b2ff73c6172a84a5142a7a0f8806336c69642ac531358ebfc7b2fae6d55a6b54f753a -DIST trimmomatic-0.36_manual.pdf 338248 BLAKE2B 846833b9e263e2bdeca29a4d2474248ff7eb1d65434314bd21dc401b00ca38208a2747474d8ac49be07c45bd48d23e3ecebbd46abe85dd5db2dddd3c935b7670 SHA512 a306ce82f5f67c51f3ce62be9758c3c49cb6363932e1d55bb171d102b6f400a1fd3518263bf74c7ba3bac596630c6654ec7de6b055566d182eb6c9ae68e3ed38 +DIST Trimmomatic-Src-0.38.zip 108472 BLAKE2B c0f3f48000103544715d1259d276ccb1ab9e5460fad3011faafbbfac9d6c49c3b0507e0024bff1e89b0dc1c7a19751765932f080c57d71faabe4779a0aa3bf90 SHA512 79e25bd83d2cdb145fbefe3a23cfcf6de758c2ec0565bd03a7af2deb2f62deb24ac7f8a169507ba1e219bb36b70e814c081232e62a31c8200ceecbb2bdcd9d8a +DIST trimmomatic-0.38_manual.pdf 338248 BLAKE2B 846833b9e263e2bdeca29a4d2474248ff7eb1d65434314bd21dc401b00ca38208a2747474d8ac49be07c45bd48d23e3ecebbd46abe85dd5db2dddd3c935b7670 SHA512 a306ce82f5f67c51f3ce62be9758c3c49cb6363932e1d55bb171d102b6f400a1fd3518263bf74c7ba3bac596630c6654ec7de6b055566d182eb6c9ae68e3ed38 diff --git a/sci-biology/trimmomatic/trimmomatic-0.36.ebuild b/sci-biology/trimmomatic/trimmomatic-0.36.ebuild deleted file mode 100644 index 302a93af1..000000000 --- a/sci-biology/trimmomatic/trimmomatic-0.36.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="Illumina adapter trimming tool" -HOMEPAGE="http://www.usadellab.org/cms/?page=trimmomatic" -SRC_URI=" - http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-Src-${PV}.zip - http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf -> "${P}"_manual.pdf" - -# http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.32.zip - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND=">=virtual/jdk-1.6:* - dev-java/ant-core" -RDEPEND=">=virtual/jre-1.6:*" - -# somehow fails to build with oracle-jdk-bin-1.7 while ibm-jdk-bin-1.6 works - -EANT_BUILD_TARGET="dist" - -src_install() { - java-pkg_newjar "dist/jar/${P}.jar" "${PN}.jar" - insinto /usr/share/${PN}/Illumina - doins adapters/*.fa - insinto /usr/share/doc/${P} - dodoc "${DISTDIR}"/${P}_manual.pdf -} diff --git a/sci-biology/trimmomatic/trimmomatic-0.38.ebuild b/sci-biology/trimmomatic/trimmomatic-0.38.ebuild new file mode 100644 index 000000000..bf01fd874 --- /dev/null +++ b/sci-biology/trimmomatic/trimmomatic-0.38.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit java-pkg-2 java-ant-2 + +DESCRIPTION="Illumina adapter trimming tool" +HOMEPAGE="http://www.usadellab.org/cms/?page=trimmomatic" +SRC_URI=" + http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-Src-${PV}.zip + http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf -> "${P}"_manual.pdf" + +# http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.32.zip + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND=">=virtual/jdk-1.6:* + dev-java/ant-core" +RDEPEND=">=virtual/jre-1.6:*" + +# somehow fails to build with oracle-jdk-bin-1.7 while ibm-jdk-bin-1.6 works + +EANT_BUILD_TARGET="dist" + +src_install() { + java-pkg_newjar "dist/jar/${P}.jar" "${PN}.jar" + insinto /usr/share/${PN}/Illumina + doins adapters/*.fa + insinto /usr/share/doc/${P} + dodoc "${DISTDIR}"/${P}_manual.pdf +} -- cgit v1.2.3-65-gdbad