From 5ae79e9f8ea29106bc2879d3a624aac3809eb59e Mon Sep 17 00:00:00 2001
From: Andrey Kislyuk <kislyuk@onyx.(none)>
Date: Sun, 27 Sep 2009 10:57:29 -0400
Subject: In main tree

---
 sci-biology/wgs-assembler/ChangeLog                | 12 -----
 sci-biology/wgs-assembler/Manifest                 | 14 ------
 sci-biology/wgs-assembler/metadata.xml             |  9 ----
 sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild | 58 ----------------------
 4 files changed, 93 deletions(-)
 delete mode 100644 sci-biology/wgs-assembler/ChangeLog
 delete mode 100644 sci-biology/wgs-assembler/Manifest
 delete mode 100644 sci-biology/wgs-assembler/metadata.xml
 delete mode 100644 sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild

diff --git a/sci-biology/wgs-assembler/ChangeLog b/sci-biology/wgs-assembler/ChangeLog
deleted file mode 100644
index e003d5338..000000000
--- a/sci-biology/wgs-assembler/ChangeLog
+++ /dev/null
@@ -1,12 +0,0 @@
-# ChangeLog for sci-biology/wgs-assembler
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/ChangeLog,v 1.1 2009/06/05 15:16:05 weaver Exp $
-
-  02 Aug 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
-  Version bump
-
-*wgs-assembler-5.3 (05 Jun 2009)
-
-  05 Jun 2009; Andrey Kislyuk <weaver@gentoo.org> +wgs-assembler-5.3.ebuild:
-  New package, ebuild written by me
-
diff --git a/sci-biology/wgs-assembler/Manifest b/sci-biology/wgs-assembler/Manifest
deleted file mode 100644
index ddd7282c7..000000000
--- a/sci-biology/wgs-assembler/Manifest
+++ /dev/null
@@ -1,14 +0,0 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-DIST wgs-5.4.tar.bz2 1876180 RMD160 1f8a82f7523509ef271c7e99d560f68367ab16a1 SHA1 2dbc316c8307181246a22d622c824885be373333 SHA256 698b22bd63fa2bb4fe7f164a92c92f82474bc8fc64c37704258ebb3bdc86d7bf
-EBUILD wgs-assembler-5.4.ebuild 1511 RMD160 c73ddde3dbb60f6e9b7c6a53d1482a5e70614696 SHA1 1efa51a72608558f777aa23f9005e8fac56de00e SHA256 3632b575a05ab2536f7f1809067c9f5b21a9c0bbedf25231b2e10fdb323b0737
-MISC ChangeLog 448 RMD160 180d861216dbbb0a498dd60bd40c0971b90b77b7 SHA1 cc3c026689defdb90012ba6ff5267f9870ae032f SHA256 660e525e1a0ffb981bcc4f4a21fca90d72d48597ec4084e56d982b20d87de662
-MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.11 (GNU/Linux)
-
-iEYEARECAAYFAkp2oBQACgkQ5BmOA85PVLijOwCgo0jtSAMEB6g+FYQ5CJL9HCgL
-ojgAn0vyL8WEgvGxAgmUw9Zhzq4yK22c
-=j2mt
------END PGP SIGNATURE-----
diff --git a/sci-biology/wgs-assembler/metadata.xml b/sci-biology/wgs-assembler/metadata.xml
deleted file mode 100644
index 3302123e5..000000000
--- a/sci-biology/wgs-assembler/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
-</pkgmetadata>
diff --git a/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild b/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild
deleted file mode 100644
index 165f2b068..000000000
--- a/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild
+++ /dev/null
@@ -1,58 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild,v 1.1 2009/06/05 15:16:05 weaver Exp $
-
-EAPI="2"
-
-inherit eutils
-
-DESCRIPTION="Whole-genome shotgun assembler based on the Celera Assembler"
-HOMEPAGE="http://sourceforge.net/projects/wgs-assembler/"
-SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~x86 ~amd64"
-
-DEPEND="x11-libs/libXt"
-RDEPEND="${DEPEND}
-	app-shells/tcsh
-	dev-perl/Log-Log4perl"
-
-S="${WORKDIR}/wgs-${PV}"
-
-src_configure() {
-	cd "${S}/kmer"
-	./configure.sh || die
-}
-
-src_compile() {
-	# not really an install target
-	# WARNING: untracked failure compiling the second target
-	emake -C kmer -j1 install || die
-	emake -C src -j1 SITE_NAME=LOCAL || die
-}
-
-src_install() {
-	OSTYPE=$(uname)
-	MACHTYPE=$(uname -m)
-	MACHTYPE=${MACHTYPE/x86_64/amd64}
-	MY_S="${OSTYPE}-${MACHTYPE}"
-	sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die
-
-	sed -i '/sub getBinDirectory/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die
-	sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die
-
-	dobin kmer/${MY_S}/bin/* || die
-	dolib.a kmer/${MY_S}/lib/* || die
-
-	insinto /usr/share/${PN}
-	doins -r ${MY_S}/bin/spec
-	insinto /usr/share/${PN}/lib
-	doins -r ${MY_S}/bin/TIGR || die
-	rm -rf ${MY_S}/bin/{TIGR,spec}
-	dobin ${MY_S}/bin/* || die
-	dolib.a ${MY_S}/lib/* || die
-	dodoc README
-}
-- 
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