From 2b3e8f43608da0a1585a5bf5a37cb21a09b9e1e8 Mon Sep 17 00:00:00 2001 From: Marius Brehler Date: Sat, 10 Jan 2015 16:40:35 +0100 Subject: sci-biology/codonw: Move to EAPI=5 --- sci-biology/codonw/ChangeLog | 6 +++++- sci-biology/codonw/codonw-1.4.4-r1.ebuild | 4 ++-- 2 files changed, 7 insertions(+), 3 deletions(-) diff --git a/sci-biology/codonw/ChangeLog b/sci-biology/codonw/ChangeLog index d2f9cc3d5..00b6629e0 100644 --- a/sci-biology/codonw/ChangeLog +++ b/sci-biology/codonw/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/codonw -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 10 Jan 2015; Marius Brehler + condow-1.4.4-r1.ebuild: + Move to EAPI=5. + *codonw-1.4.4-r1 (08 Nov 2010) 08 Nov 2010; Kacper Kowalik -codonw-1.4.4.ebuild, diff --git a/sci-biology/codonw/codonw-1.4.4-r1.ebuild b/sci-biology/codonw/codonw-1.4.4-r1.ebuild index f7f48e13b..50e2f9c1d 100644 --- a/sci-biology/codonw/codonw-1.4.4-r1.ebuild +++ b/sci-biology/codonw/codonw-1.4.4-r1.ebuild @@ -1,8 +1,8 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ -EAPI=2 +EAPI=5 inherit toolchain-funcs versionator -- cgit v1.2.3-18-g5258 From 564be65c08d2b9079ea9e13a9a91ab7c1381624c Mon Sep 17 00:00:00 2001 From: Marius Brehler Date: Sat, 10 Jan 2015 16:54:49 +0100 Subject: ci-biology/rnaplex: Move to EAPI=5; Update homepage and SRC_URI. --- sci-biology/rnaplex/ChangeLog | 6 +++++- sci-biology/rnaplex/Manifest | 2 +- sci-biology/rnaplex/rnaplex-0.2.ebuild | 10 +++++----- 3 files changed, 11 insertions(+), 7 deletions(-) diff --git a/sci-biology/rnaplex/ChangeLog b/sci-biology/rnaplex/ChangeLog index a960c4ffe..240e68218 100644 --- a/sci-biology/rnaplex/ChangeLog +++ b/sci-biology/rnaplex/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/rnaplex -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 10 Jan 2015; Marius Brehler + rnaplex-0.2.ebuild: + Move to EAPI=5; Update homepage and SRC_URI. + 29 Apr 2009; Andrey Kislyuk ChangeLog: New package, ebuild written by me diff --git a/sci-biology/rnaplex/Manifest b/sci-biology/rnaplex/Manifest index 3a17125fb..173cda438 100644 --- a/sci-biology/rnaplex/Manifest +++ b/sci-biology/rnaplex/Manifest @@ -1 +1 @@ -DIST RNAplex-0.2.tar.gz 581128 SHA256 7907873009c8fc03b1918400bb82122774bc5df2602adc1426c5686a0b3f37de +DIST RNAplex-0.2.tar.gz 579904 SHA256 a30ab9128e4b35795f5e6f1e32a8a66b6fe3de1b6395a4326081cc6bec99cebb SHA512 ef91dd869284ad492b627b84288fe3c56a7c8d44dec8d2a48668efa4e476c9e7856380bc1e199604db4fa53f4d9bfe38cf057f2e181bf1b24ad375e5691a0a2e WHIRLPOOL bbba8f625373a5f0ae791c0e3239fb188764607635b79fe41ad364f71e34ed3fb018ba7aa629584cfa995b68e7c3bcf3ea67862e14686fec023de256b65ce423 diff --git a/sci-biology/rnaplex/rnaplex-0.2.ebuild b/sci-biology/rnaplex/rnaplex-0.2.ebuild index f2a91990c..8aa1b7e24 100644 --- a/sci-biology/rnaplex/rnaplex-0.2.ebuild +++ b/sci-biology/rnaplex/rnaplex-0.2.ebuild @@ -1,14 +1,14 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ -EAPI=2 +EAPI=5 MY_P=RNAplex-${PV} DESCRIPTION="RNA-RNA interaction search" -HOMEPAGE="http://www.tbi.univie.ac.at/~htafer/" -SRC_URI="http://www.tbi.univie.ac.at/~htafer/RNAplex/${MY_P}.tar.gz" +HOMEPAGE="http://www.bioinf.uni-leipzig.de/Software/RNAplex/" +SRC_URI="http://www.bioinf.uni-leipzig.de/Software/RNAplex/RNAplex-0.2.tar.gz" LICENSE="GPL-2" SLOT="0" @@ -16,7 +16,7 @@ IUSE="" KEYWORDS="~amd64 ~x86" DEPEND="" -RDEPEND="" +RDEPEND="${DEPEND}" S=${WORKDIR}/${MY_P} src_install() { -- cgit v1.2.3-18-g5258 From db7ca5d3a8f045d5dc8d92ebee03981130d0b3ea Mon Sep 17 00:00:00 2001 From: Marius Brehler Date: Sat, 10 Jan 2015 16:57:01 +0100 Subject: Drop unnecessary die --- sci-biology/rnaplex/rnaplex-0.2.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-biology/rnaplex/rnaplex-0.2.ebuild b/sci-biology/rnaplex/rnaplex-0.2.ebuild index 8aa1b7e24..1ac149959 100644 --- a/sci-biology/rnaplex/rnaplex-0.2.ebuild +++ b/sci-biology/rnaplex/rnaplex-0.2.ebuild @@ -20,5 +20,5 @@ RDEPEND="${DEPEND}" S=${WORKDIR}/${MY_P} src_install() { - emake DESTDIR="${D}" install || die "install failed" + emake DESTDIR="${D}" install } -- cgit v1.2.3-18-g5258 From e95477b2468656bfdb318892b538e7e29e733d4a Mon Sep 17 00:00:00 2001 From: Marius Brehler Date: Sat, 10 Jan 2015 17:00:59 +0100 Subject: sci-biology/codonw: Drop unnecessary dies --- sci-biology/codonw/codonw-1.4.4-r1.ebuild | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/sci-biology/codonw/codonw-1.4.4-r1.ebuild b/sci-biology/codonw/codonw-1.4.4-r1.ebuild index 50e2f9c1d..85c0c5e9e 100644 --- a/sci-biology/codonw/codonw-1.4.4-r1.ebuild +++ b/sci-biology/codonw/codonw-1.4.4-r1.ebuild @@ -26,14 +26,14 @@ src_prepare() { } src_compile() { - emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" || die + emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" } src_install() { - dobin codonw || die + dobin codonw # woohoo watch out for collisions for i in rscu cu aau raau tidy reader cutab cutot transl bases base3s dinuc cai fop gc3s gc cbi enc; do - dosym codonw /usr/bin/${i} || die + dosym codonw /usr/bin/${i} done - dodoc *.txt || die + dodoc *.txt } -- cgit v1.2.3-18-g5258 From 49de1484da2ae49b3b7e2b218c6ea55214defaa6 Mon Sep 17 00:00:00 2001 From: Marius Brehler Date: Sat, 10 Jan 2015 18:51:26 +0100 Subject: sci-biology/rnaplex: Fixes according to jlec's advices --- sci-biology/rnaplex/ChangeLog | 2 +- sci-biology/rnaplex/rnaplex-0.2.ebuild | 8 +------- 2 files changed, 2 insertions(+), 8 deletions(-) diff --git a/sci-biology/rnaplex/ChangeLog b/sci-biology/rnaplex/ChangeLog index 240e68218..dbdac52b3 100644 --- a/sci-biology/rnaplex/ChangeLog +++ b/sci-biology/rnaplex/ChangeLog @@ -4,7 +4,7 @@ 10 Jan 2015; Marius Brehler rnaplex-0.2.ebuild: - Move to EAPI=5; Update homepage and SRC_URI. + Move to EAPI=5; Update homepage and SRC_URI; Cleanup. 29 Apr 2009; Andrey Kislyuk ChangeLog: New package, ebuild written by me diff --git a/sci-biology/rnaplex/rnaplex-0.2.ebuild b/sci-biology/rnaplex/rnaplex-0.2.ebuild index 1ac149959..d9e693b85 100644 --- a/sci-biology/rnaplex/rnaplex-0.2.ebuild +++ b/sci-biology/rnaplex/rnaplex-0.2.ebuild @@ -8,17 +8,11 @@ MY_P=RNAplex-${PV} DESCRIPTION="RNA-RNA interaction search" HOMEPAGE="http://www.bioinf.uni-leipzig.de/Software/RNAplex/" -SRC_URI="http://www.bioinf.uni-leipzig.de/Software/RNAplex/RNAplex-0.2.tar.gz" +SRC_URI="http://www.bioinf.uni-leipzig.de/Software/RNAplex/${MY_P}.tar.gz" LICENSE="GPL-2" SLOT="0" IUSE="" KEYWORDS="~amd64 ~x86" -DEPEND="" -RDEPEND="${DEPEND}" S=${WORKDIR}/${MY_P} - -src_install() { - emake DESTDIR="${D}" install -} -- cgit v1.2.3-18-g5258 From b0825ab2c556914504da8037850fadaea006bfaa Mon Sep 17 00:00:00 2001 From: Marius Brehler Date: Sat, 10 Jan 2015 19:11:03 +0100 Subject: sci-libs/arrayfire: Fix DEPEND, unpacker is used instead of unzip --- sci-libs/arrayfire/arrayfire-9999.ebuild | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/sci-libs/arrayfire/arrayfire-9999.ebuild b/sci-libs/arrayfire/arrayfire-9999.ebuild index a1af26b91..50aca3583 100644 --- a/sci-libs/arrayfire/arrayfire-9999.ebuild +++ b/sci-libs/arrayfire/arrayfire-9999.ebuild @@ -22,8 +22,7 @@ RDEPEND=" virtual/cblas cuda? ( >=dev-util/nvidia-cuda-toolkit-6.0 ) sci-libs/fftw:3.0" -DEPEND="${RDEPEND} - test? ( app-arch/unzip )" +DEPEND="${RDEPEND}" BUILD_DIR="${S}/build" CMAKE_BUILD_TYPE=Release -- cgit v1.2.3-18-g5258 From 8e5938c433a09162e517e7e3127fa365a764ea45 Mon Sep 17 00:00:00 2001 From: Marius Brehler Date: Sat, 10 Jan 2015 23:39:47 +0100 Subject: sci-libs/arrayfire: Improve and clean gtest src handling --- sci-libs/arrayfire/arrayfire-9999.ebuild | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/sci-libs/arrayfire/arrayfire-9999.ebuild b/sci-libs/arrayfire/arrayfire-9999.ebuild index 50aca3583..107af240e 100644 --- a/sci-libs/arrayfire/arrayfire-9999.ebuild +++ b/sci-libs/arrayfire/arrayfire-9999.ebuild @@ -4,12 +4,14 @@ EAPI=5 -inherit cmake-utils git-r3 unpacker +inherit cmake-utils git-r3 + +GTEST_PV="1.7.0" DESCRIPTION="A general purpose GPU library." HOMEPAGE="http://www.arrayfire.com/" EGIT_REPO_URI="https://github.com/arrayfire/arrayfire.git" -SRC_URI="test? ( https://googletest.googlecode.com/files/gtest-1.7.0.zip )" +SRC_URI="test? ( https://googletest.googlecode.com/files/gtest-${GTEST_PV}.zip )" KEYWORDS="~amd64" LICENSE="BSD" @@ -51,8 +53,8 @@ src_unpack() { if use test; then mkdir -p "${BUILD_DIR}"/third_party/src/ || die cd "${BUILD_DIR}"/third_party/src/ || die - unpack_zip "${DISTDIR}/"gtest-1.7.0.zip - mv "${BUILD_DIR}"/third_party/src/gtest-1.7.0 "${BUILD_DIR}"/third_party/src/googletest || die + unpack ${A} + mv "${BUILD_DIR}"/third_party/src/gtest-"${GTEST_PV}" "${BUILD_DIR}"/third_party/src/googletest || die fi } -- cgit v1.2.3-18-g5258