From c0b00572f627ef5eefae26c0c8630b9cef580639 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Martin=20Mokrej=C5=A1?= Date: Thu, 15 Jan 2015 12:48:05 +0100 Subject: version bump Package-Manager: portage-2.2.7 --- sci-biology/quast/ChangeLog | 8 +++++++- sci-biology/quast/Manifest | 2 +- sci-biology/quast/quast-2.2.ebuild | 39 -------------------------------------- sci-biology/quast/quast-2.3.ebuild | 39 ++++++++++++++++++++++++++++++++++++++ 4 files changed, 47 insertions(+), 41 deletions(-) delete mode 100644 sci-biology/quast/quast-2.2.ebuild create mode 100644 sci-biology/quast/quast-2.3.ebuild diff --git a/sci-biology/quast/ChangeLog b/sci-biology/quast/ChangeLog index ccf3a0e68..ed58021f8 100644 --- a/sci-biology/quast/ChangeLog +++ b/sci-biology/quast/ChangeLog @@ -1,7 +1,13 @@ # ChangeLog for sci-biology/quast -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*quast-2.3 (15 Jan 2015) + + 15 Jan 2015; Martin Mokrejs +quast-2.3.ebuild, + -quast-2.2.ebuild: + version bump + 13 Nov 2014; Justin Lecher quast-2.2.ebuild, metadata.xml: Bump to new python eclasses diff --git a/sci-biology/quast/Manifest b/sci-biology/quast/Manifest index 9ddb43cb2..f89b3dc4e 100644 --- a/sci-biology/quast/Manifest +++ b/sci-biology/quast/Manifest @@ -1 +1 @@ -DIST quast-2.2.tar.gz 19814517 SHA256 c66cb9b063d82962bceb11762794fb2e5a57846c8a3aa93ca5f83951cf669d85 SHA512 e979b63f53c3909f804d733ae2cbfd0963fca3dc9194b2a04c8d7be53d253d087853520198a8261a5eba186369486f6e2f4d469814a2d8632072bd73d0e5b8bb WHIRLPOOL 76078a45e24a961acd6fafadf26d08daa79d0b65f224d1bfb87fd404532161c4b667a2873fcf1023e7156bc1c5273de48adb7bfcc5eee68bd3218d03db3aaaa2 +DIST quast-2.3.tar.gz 17631110 SHA256 efad099097e4d148b02e98892c5e93a2407c4debecb12860629142192be62b0d SHA512 eddece31d2ba51548f3e395f77a382d019ef282fb97c5ecfa18cf124c6a619bee760f238b046517a67b7ccbc5354ff36666d0f01cc75b098e9baee2dd3652f40 WHIRLPOOL 82520b21ba791918f05d75e7cc098e54628af1f73bb3735efcd86c2eb669029a28ef40756b7c4aa23e0cd6a547032428cfcb718bbcd9aa970e43e1aa89d4667c diff --git a/sci-biology/quast/quast-2.2.ebuild b/sci-biology/quast/quast-2.2.ebuild deleted file mode 100644 index 383914717..000000000 --- a/sci-biology/quast/quast-2.2.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit python-r1 - -DESCRIPTION="Compare quality of multiple genome assemblies to each other" -HOMEPAGE="http://bioinf.spbau.ru/QUAST" -SRC_URI="http://sourceforge.net/projects/quast/files/${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND=" - dev-python/matplotlib[${PYTHON_USEDEP}] - sci-biology/mummer - sci-biology/glimmerhmm" -# sci-biology/GAGE -# sci-biology/GeneMarkS -# sci-biology/MetaGeneMark" - -# the above packages need to be created first - -RDEPEND="${DEPEND}" - -src_install(){ - python_foreach_impl python_newscript quast.py quast - python_foreach_impl python_newscript metaquast.py metaquast - - dodoc manual.html CHANGES - - # TODO: install lib/ subdirectory contents into some PATH and PYTHON_PATH -} diff --git a/sci-biology/quast/quast-2.3.ebuild b/sci-biology/quast/quast-2.3.ebuild new file mode 100644 index 000000000..3cf92e32d --- /dev/null +++ b/sci-biology/quast/quast-2.3.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit python-r1 + +DESCRIPTION="Compare quality of multiple genome assemblies to each other" +HOMEPAGE="http://bioinf.spbau.ru/QUAST" +SRC_URI="http://sourceforge.net/projects/quast/files/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=" + dev-python/matplotlib[${PYTHON_USEDEP}] + sci-biology/mummer + sci-biology/glimmerhmm" +# sci-biology/GAGE +# sci-biology/GeneMarkS +# sci-biology/MetaGeneMark" + +# the above packages need to be created first + +RDEPEND="${DEPEND}" + +src_install(){ + python_foreach_impl python_newscript quast.py quast + python_foreach_impl python_newscript metaquast.py metaquast + + dodoc manual.html CHANGES + + # TODO: install lib/ subdirectory contents into some PATH and PYTHON_PATH +} -- cgit v1.2.3