From c151cbcb832f1347e8889c5aa1382e3dd322d5b5 Mon Sep 17 00:00:00 2001 From: Markus Dittrich Date: Thu, 5 Nov 2009 21:45:52 -0500 Subject: Merged Justin's fix into portage. --- sci-biology/stride/ChangeLog | 29 ------------------------ sci-biology/stride/Manifest | 16 ------------- sci-biology/stride/files/LDFLAGS.patch | 11 --------- sci-biology/stride/metadata.xml | 9 -------- sci-biology/stride/stride-20011129-r1.ebuild | 34 ---------------------------- 5 files changed, 99 deletions(-) delete mode 100644 sci-biology/stride/ChangeLog delete mode 100644 sci-biology/stride/Manifest delete mode 100644 sci-biology/stride/files/LDFLAGS.patch delete mode 100644 sci-biology/stride/metadata.xml delete mode 100644 sci-biology/stride/stride-20011129-r1.ebuild diff --git a/sci-biology/stride/ChangeLog b/sci-biology/stride/ChangeLog deleted file mode 100644 index 773e384a2..000000000 --- a/sci-biology/stride/ChangeLog +++ /dev/null @@ -1,29 +0,0 @@ -# ChangeLog for sci-biology/stride -# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/stride/ChangeLog,v 1.6 2007/09/20 14:35:18 coldwind Exp $ - - 20 Sep 2007; Santiago M. Mola - stride-20011129.ebuild: - Change sed separator to :, now it doesn't fail if CC contains a path. - - 22 May 2007; Olivier Fisette stride-20011129.ebuild: - Updated home page. - - 03 Dec 2006; Steve Dibb stride-20011129.ebuild: - Add ~amd64, bug 147983 - - 01 Oct 2006; Donnie Berkholz ; metadata.xml: - Transfer to sci-biology herd from sci. - - 28 Jul 2006; Donnie Berkholz ; - stride-20011129.ebuild: - Keyword ~ppc. - -*stride-20011129 (23 Jul 2006) - - 23 Jul 2006; Markus Dittrich +metadata.xml, - +stride-20011129.ebuild: - Initial import. Many thanks go the the author Dmitrij Frishman - for allowing us to distribute the source - and for an updated version of the code. - diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest deleted file mode 100644 index 614dcf293..000000000 --- a/sci-biology/stride/Manifest +++ /dev/null @@ -1,16 +0,0 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - -AUX LDFLAGS.patch 280 RMD160 f4f594bfab2ac2151bbf5d679c8ead73dec11f3f SHA1 f4eb9952b4e54d9ec2610cf7444c31efd23562e1 SHA256 3b2387a0649d76a24d5e9ed611ec3da43ca7844a3ce3704ebbad63699328fd10 -DIST stride-20060723-update.patch.bz2 5621 RMD160 c5ac88dcff4d074adb18fb09cc39f37e6b95d82a SHA1 a57e7780d2dd44ce53e72dac35ed4d8539a83d10 SHA256 8d48627c294b4efba67acba10fba47b20c0a8d5f7e06c2775a2d7eaaa0aa7b81 -DIST stride.tar.gz 56441 RMD160 6fdcf064f37ce44529446a043b56663af9765054 SHA1 f85cca717c79200bf33fa3a80323ccd9da471669 SHA256 d272700bccd046199f6ea1faed31a2a2662a7d5f13b7663736a1818ac18c87b9 -EBUILD stride-20011129-r1.ebuild 920 RMD160 18976a3042db65140c0e2b6092c294ae383e15ed SHA1 a748c29c7fb6d5ee9be71baf72cf5786fa773dd6 SHA256 8d4c39f18d9925f01bebeb21211758c7b7fe6dda642e87b61474b5babf2673b8 -MISC ChangeLog 1071 RMD160 d5e709200df9667ad51dc538b6b990ca7ed21919 SHA1 b385a5dcc68636fa354deed50a193511136ac3ab SHA256 8902fd640c18d9099daffb1c796da4e5e9d2c0c099dae06bd50fe368dfbed5c0 -MISC metadata.xml 262 RMD160 346498c47da29f51b223d00c4d2cdf35e69386f6 SHA1 fdf6cc4c581eb3162837bfde3334803445332489 SHA256 732b5b7d88c83d3b0bd0be860f512d9545353e2a2c89b873da8c2217394736c7 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.11 (GNU/Linux) - -iEYEARECAAYFAkrnVsQACgkQgAnW8HDreRYxNgCff1XsZFxnke/M9aHFofcrMhDa -kP8AoMoJogn/UxQEW+3eU7CFePqEnk2K -=nM1I ------END PGP SIGNATURE----- diff --git a/sci-biology/stride/files/LDFLAGS.patch b/sci-biology/stride/files/LDFLAGS.patch deleted file mode 100644 index 1761b1212..000000000 --- a/sci-biology/stride/files/LDFLAGS.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- Makefile 2009-10-27 21:18:45.000000000 +0100 -+++ Makefile.new 2009-10-27 21:19:00.000000000 +0100 -@@ -12,7 +12,7 @@ - - - stride : $(OBJECT) -- $(CC) $(OBJECT) $(FLAGS) $(BINDIR)/stride -+ $(CC) $(LDFLAGS) $(OBJECT) $(FLAGS) $(BINDIR)/stride - - $(OBJECT) : stride.h protot.h - diff --git a/sci-biology/stride/metadata.xml b/sci-biology/stride/metadata.xml deleted file mode 100644 index 12ba45ba5..000000000 --- a/sci-biology/stride/metadata.xml +++ /dev/null @@ -1,9 +0,0 @@ - - - - - markusle@gentoo.org - Markus Dittrich - - sci-biology - diff --git a/sci-biology/stride/stride-20011129-r1.ebuild b/sci-biology/stride/stride-20011129-r1.ebuild deleted file mode 100644 index 9e7f36000..000000000 --- a/sci-biology/stride/stride-20011129-r1.ebuild +++ /dev/null @@ -1,34 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI="2" - -inherit eutils toolchain-funcs - -DESCRIPTION="A program for protein secondary structure assignment from atomic coordinates." -HOMEPAGE="http://www.embl-heidelberg.de/argos/stride/stride_info.html" -SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}/src/${PN}.tar.gz - mirror://gentoo/${PN}-20060723-update.patch.bz2" - -SLOT="0" -LICENSE="as-is" -KEYWORDS="~amd64 ~ppc ~x86" -IUSE="" - -S="${WORKDIR}" - -src_prepare() { - # this patch updates the source to the most recent - # version which was kindly provided by the author - epatch "${DISTDIR}/${PN}-20060723-update.patch.bz2" - epatch "${FILESDIR}"/LDFLAGS.patch - - # fix makefile - sed -e "/^CC/s:gcc -g:$(tc-getCC) ${CFLAGS}:" -i Makefile || \ - die "Failed to fix Makefile" -} - -src_install() { - dobin ${PN} || die "Failed to install stride binary" -} -- cgit v1.2.3-65-gdbad