From e485db9cdc6be86740375f1cf1fde6dd09969fd0 Mon Sep 17 00:00:00 2001 From: Alexey Shvetsov Date: Mon, 5 Oct 2009 01:52:45 +0400 Subject: [sci-biology/foldingathome] Version bump (Portage version: 2.2_rc43/git/Linux x86_64) (Signed Manifest commit) --- sci-biology/foldingathome/ChangeLog | 238 +++++++++++++++++++++ sci-biology/foldingathome/Manifest | 17 ++ sci-biology/foldingathome/files/6.24/fah-init | 27 +++ .../foldingathome/files/6.24/folding-conf.d | 21 ++ sci-biology/foldingathome/files/6.24/initfolding | 6 + .../foldingathome/foldingathome-6.24.ebuild | 56 +++++ sci-biology/foldingathome/metadata.xml | 5 + 7 files changed, 370 insertions(+) create mode 100644 sci-biology/foldingathome/ChangeLog create mode 100644 sci-biology/foldingathome/Manifest create mode 100644 sci-biology/foldingathome/files/6.24/fah-init create mode 100644 sci-biology/foldingathome/files/6.24/folding-conf.d create mode 100644 sci-biology/foldingathome/files/6.24/initfolding create mode 100644 sci-biology/foldingathome/foldingathome-6.24.ebuild create mode 100644 sci-biology/foldingathome/metadata.xml diff --git a/sci-biology/foldingathome/ChangeLog b/sci-biology/foldingathome/ChangeLog new file mode 100644 index 000000000..7c1beaf4e --- /dev/null +++ b/sci-biology/foldingathome/ChangeLog @@ -0,0 +1,238 @@ +# ChangeLog for sci-biology/foldingathome +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/foldingathome/ChangeLog,v 1.27 2008/11/30 19:46:50 je_fro Exp $ + +*foldingathome-6.24 (04 Oct 2009) + + 04 Oct 2009; Alexey Shvetsov +files/6.24/fah-init, + +foldingathome-6.24.ebuild, +files/6.24/folding-conf.d, + +files/6.24/initfolding, +metadata.xml: + Version bump + + 30 Nov 2008; Jeff Gardner files/6.02/folding-conf.d: + Removing smp from default opts to hopefully fix bug #248896 + Thanks to Vladimir Berezhnoy. + + 22 Nov 2008; Jeff Gardner + foldingathome-6.02-r1.ebuild: + Add shameless plug for my folding group. + +*foldingathome-6.02-r1 (22 Nov 2008) + + 22 Nov 2008; Jeff Gardner -foldingathome-6.02.ebuild, + +foldingathome-6.02-r1.ebuild: + Bumping for init script fix and add back ~x86. + + 22 Nov 2008; Jeff Gardner files/6.02/fah-init: + Changing to use init script from Constantin Baranov on bug #218331 + + 03 Aug 2008; Jeff Gardner -files/6.02_beta1/fah-init, + -files/6.02_beta1/folding-conf.d, -files/6.02_beta1/initfolding, + -foldingathome-6.02_beta1.ebuild: + remove dead beta + +*foldingathome-6.02 (03 Aug 2008) + + 03 Aug 2008; Jeff Gardner +files/6.02/fah-init, + +files/6.02/folding-conf.d, +files/6.02/initfolding, + +foldingathome-6.02.ebuild: + Latest version, thanks to Nicolas Schlumberger, closes bug #233751 + + 15 Jun 2008; Jeff Gardner + files/6.02_beta1/folding-conf.d: + Add smp option thanks to Timon Van Overveldt in bug #194423 + +*foldingathome-6.02_beta1 (14 Jun 2008) + + 14 Jun 2008; Jeff Gardner -files/5.91_beta/fah-init, + -files/5.91_beta/initfolding, -files/5.91_beta/folding-conf.d, + +files/6.02_beta1/fah-init, +files/6.02_beta1/folding-conf.d, + +files/6.02_beta1/initfolding, -foldingathome-5.91_beta.ebuild, + +foldingathome-6.02_beta1.ebuild: + Latest beta client + + 12 Jul 2007; Christoph Mende + foldingathome-5.0.2-r5.ebuild: + Stable on amd64 wrt bug #164823 + + 12 Jul 2007; Christian Faulhammer + foldingathome-5.0.2-r5.ebuild: + stable x86, bug 164823 + + 03 Jul 2007; Jeff Gardner + foldingathome-5.91_beta.ebuild: + foldingathome-5.91_beta has expired. Removing KEYWORDS until the next + release arrives. + + 02 Jul 2007; Piotr Jaroszyński + foldingathome-5.0.2-r3.ebuild, foldingathome-5.0.2-r5.ebuild: + (QA) RESTRICT clean up. + + 21 Apr 2007; Jeff Gardner + foldingathome-5.0.2-r3.ebuild, foldingathome-5.0.2-r5.ebuild: + Use newconfd wrt bug #174266 + + 11 Apr 2007; Jeff Gardner + foldingathome-5.91_beta.ebuild: + Fixed to better install files under /etc. + +*foldingathome-5.91_beta (10 Apr 2007) + + 10 Apr 2007; Jeff Gardner +files/5.91_beta/fah-init, + +files/5.91_beta/folding-conf.d, +files/5.91_beta/initfolding, + +foldingathome-5.91_beta.ebuild: + Adding the amd64-smp client for testing. Thanks to John Gibson. + + 03 Nov 2006; Olivier Fisette -files/init-5.0.2-r4, + -foldingathome-5.0.2-r4.ebuild: + Pruned old version. + +*foldingathome-5.0.2-r5 (16 Jun 2006) + + 16 Jun 2006; Patrick Kursawe +files/init-5.0.2-r5, + +foldingathome-5.0.2-r5.ebuild: + Adding --chdir to start-stop-daemon because of bug #109707 + +*foldingathome-5.0.2-r4 (14 Aug 2005) + + 14 Aug 2005; Olivier Fisette +files/init-5.0.2-r4, + +foldingathome-5.0.2-r4.ebuild: + Fixed bug #95697: license is now correct and the binaries are no longer + stripped since we are not allowed to modify them. Thanks to Ian Kelly + . Fixed bugs #90247 and #93047: Foldingathome init script + now uses start-stop-daemon. Thanks to James Lademann + . + + 22 Apr 2005; Danny van Dyk + foldingathome-5.0.2-r3.ebuild: + Marked stable on amd64. + + 03 Mar 2005; Brandon Low -files/folding-conf.d, + -files/folding-init.d, -files/folding-init.d-r1, -files/folding-init.d-r3, + -files/folding.sh, files/init-5.0.2-r3, -files/initfolding, + -files/initfolding-r1, -foldingathome-4.0.0-r2.ebuild, + -foldingathome-4.0.0.ebuild: + Fix bug 82345, nice 20 doesn't exist. + Remove old ebuilds and files. + + 08 Feb 2005; Brandon Low + foldingathome-5.0.2-r3.ebuild: + Mark stable on x86 + + 05 Feb 2005; Brandon Low -files/copy_client_config, + -files/folding-init.d-r2, -files/folding-init.d-r4, -files/init-5.0.2-r1, + -files/init-5.0.2-r2, -foldingathome-5.0.2-r1.ebuild, + -foldingathome-5.0.2-r2.ebuild, -foldingathome-5.0.2.ebuild: + Clean up some cruft + +*foldingathome-5.0.2-r3 (05 Feb 2005) + + 05 Feb 2005; Brandon Low +files/init-5.0.2-r3, + +foldingathome-5.0.2-r3.ebuild: + Fix bug #80778 + +*foldingathome-5.0.2-r2 (04 Feb 2005) + + 04 Feb 2005; Brandon Low +files/init-5.0.2-r2, + +foldingathome-5.0.2-r2.ebuild: + Fix bug #79574. Add unitinfo target to initscript to get the status of each + core on the system. Thanks to Yosef Meller for the idea + and initial patch + +*foldingathome-5.0.2-r1 (03 Feb 2005) + + 03 Feb 2005; Brandon Low + +files/copy_client_config-5.0.2-r1, +files/init-5.0.2-r1, + +foldingathome-5.0.2-r1.ebuild: + Fix bug 71700 hopefully. Use bash not python for copy_client_config. Update + the init script to do more sane things and not fail to stop on multi-cpu + systems. + +*foldingathome-4.0.0-r2 (23 Dec 2004) + + 23 Dec 2004; Olivier Fisette +metadata.xml, + +files/copy_client_config, +files/folding-conf.d, +files/folding-conf.d-r1, + +files/folding-init.d, +files/folding-init.d-r1, +files/folding-init.d-r2, + +files/folding-init.d-r3, +files/folding-init.d-r4, +files/folding.sh, + +files/initfolding, +files/initfolding-r1, +files/initfolding-r2, + +foldingathome-4.0.0-r2.ebuild, +foldingathome-4.0.0.ebuild, + +foldingathome-5.0.2.ebuild: + Moved from app-sci/foldingathome to sci-biology/foldingathome. + + 13 Dec 2004; Patrick Kursawe + -foldingathome-4.0.0-r1.ebuild: + Cleanup + +*foldingathome-5.0.2 (09 Nov 2004) + + 09 Nov 2004; Steve Arnold +files/copy_client_config, + +files/folding-conf.d-r1, +files/folding-init.d-r4, +files/initfolding-r2, + +foldingathome-5.0.2.ebuild: + bumped to current version (bug 60318) with ebuild from Gregory P. Smith + . Gentoo team config. + + 12 Jun 2004; Danny van Dyk + foldingathome-4.0.0-r2.ebuild: + Marked ~amd64. + +*foldingathome-4.0.0-r2 (07 Jun 2004) + + 07 Jun 2004; Patrick Kursawe + foldingathome-3.24-r1.ebuild, foldingathome-3.24.ebuild, + foldingathome-4.0.0-r2.ebuild, files/folding-init.d-r3: + No longer redirecting output to a redundand log file, see bug #51489 + Cleanup, removing 3.x versions. + + 23 Apr 2004; David Holm foldingathome-4.0.0-r1.ebuild: + Added to ~ppc. + +*foldingathome-4.0.0-r1 (22 Apr 2004) + + 22 Apr 2004; Patrick Kursawe + foldingathome-4.0.0-r1.ebuild, files/folding-conf.d, + files/folding-init.d-r2, files/initfolding-r1: + Added support to run multiple clients for those with multiprocessors + and the ability to pass options to the Folding clients. + Based on bug #47526 (by Mike Caley ) + + 26 Mar 2004; Patrick Kursawe + foldingathome-3.14.ebuild, foldingathome-3.24-r1.ebuild, + foldingathome-3.24.ebuild, foldingathome-4.0.0.ebuild: + Setting IUSE, removing S= where not necessary, declaring 4.0.0 stable for x86 + + 09 Mar 2004; Daniel Ahlberg foldingathome-4.0.0.ebuild: + Adding amd64 keyword. Closing #43779. + +*foldingathome-4.0.0 (03 Mar 2004) + + 03 Mar 2004; Patrick Kursawe + foldingathome-4.0.0.ebuild: + Version bump inspired by bug #34859 + +*foldingathome-3.24-r1 (01 Mar 2004) + + 01 Mar 2004; Patrick Kursawe + foldingathome-3.24-r1.ebuild, files/folding-init.d-r1, files/folding.sh, + files/initfolding: + Running as seperate user now. + + 05 May 2003; Daniel Ahlberg files/folding-init.d : + Fixed stop() in init script. Fix by + Roderick van Domburg in #20327. + + 23 Apr 2003; Daniel Ahlberg foldingathome-3.2.4.ebuild, files/folding-init.d : + Now has the version number in SRC_URI and also uses the newer client if we're running >=glibc-2.3.0. + Also updated init script. Closes #19709 and #17715. + +*foldingathome-3.24 (27 Feb 2003) + + 27 Feb 2003; Daniel Ahlberg foldingathome-3.24.ebuild : + Version bump. + + 27 Feb 2003; Daniel Ahlberg files/folding-init.d : + Start the daemon with nice, closes #12950. + +*foldingathome-3.14 (04 Nov 2002) + + 04 Nov 2002; Daniel Ahlberg : + Initial import. Ebuild contributed by Ryan Shaw in #9535. diff --git a/sci-biology/foldingathome/Manifest b/sci-biology/foldingathome/Manifest new file mode 100644 index 000000000..6228c0669 --- /dev/null +++ b/sci-biology/foldingathome/Manifest @@ -0,0 +1,17 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +AUX 6.24/fah-init 802 RMD160 7c15544374e4adb9d8351a478f3551bcebd665ab SHA1 af814b258f67fcaf6bc6a5519c886895c31208fe SHA256 94e35a7aabfb0b2f10f5c8a6f28adca543dedaa51d4e737f4abffeef46a09323 +AUX 6.24/folding-conf.d 854 RMD160 c705e87e36b32b764eba185c2916a81a929e8c16 SHA1 6b29cac64993d9518fbefa8a61f09e07e6d44562 SHA256 815559a3c30858d47836dcb9244f8a42799630c88ac013e50f19fd74cca33c8c +AUX 6.24/initfolding 125 RMD160 70e92fa4aa493fdf362e98c88850008a2d9aa226 SHA1 27838b24f2f12b51212fa1845c210a1443911dfc SHA256 8bada0baf3b0835774c472e0e2e05e7cebfa675a77c15ebdf75fee6d80a95f8b +DIST FAH6.24beta-Linux.tgz 444667 RMD160 925d7686f42e7c39c00efc4afae534080072cf73 SHA1 609cc62ea65e0be9e1dbcd0ac62628b2b2689f93 SHA256 0b8ea7e824331f7b54323a756f5f8ea91365614d2f74079f8c3fdcfcf073ac49 +EBUILD foldingathome-6.24.ebuild 1591 RMD160 81efd5e8da212430462708e724b5c9463f1e20ba SHA1 ad463f8a0aa00093619f9332595ad4f1227420d1 SHA256 87c14f45a04b7789245c4de9484c20ab2a021b833db6d23b4cc4b7d47bafc8f1 +MISC ChangeLog 9195 RMD160 5b93b8cc0ae95d83c93d4bc9b1fb74c03c927369 SHA1 e18145b24646a2eea9f8e7eef5878cf8b291e57f SHA256 66ddd7945a2669209fc5a6ce8d4dd28c15f1ba964ef51e014d76552f5383b7c7 +MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.11 (GNU/Linux) + +iEYEARECAAYFAkrJGS0ACgkQ5BmOA85PVLjisgCfUmot5mH1tPVILlQ3X2n6Twm+ +mmwAnAsXKSpRSD+3h1jGUhEtcTgWe989 +=Ftkn +-----END PGP SIGNATURE----- diff --git a/sci-biology/foldingathome/files/6.24/fah-init b/sci-biology/foldingathome/files/6.24/fah-init new file mode 100644 index 000000000..70424cac1 --- /dev/null +++ b/sci-biology/foldingathome/files/6.24/fah-init @@ -0,0 +1,27 @@ +#!/sbin/runscript +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/foldingathome/files/6.02/fah-init,v 1.3 2008/11/22 21:31:26 je_fro Exp $ + +opts="${opts} unitinfo" + +unitinfo() { + einfo "$(head -n1 /opt/foldingathome/unitinfo.txt):" + sed -e '1,2d' /opt/foldingathome/unitinfo.txt +} + +start() { + ebegin "Starting Folding@Home" + cd /opt/foldingathome + start-stop-daemon --chdir ${PWD} --chuid foldingathome --nicelevel 19 \ + --make-pidfile --pidfile "${PIDFILE}" \ + --start --background --exec ./fah6 -- ${FOLD_OPTS} + eend $? +} + +stop() { + ebegin "Stopping Folding@Home" + start-stop-daemon --stop --user foldingathome --pidfile "${PIDFILE}" + eend $? + killall --user foldingathome --signal SIGKILL +} diff --git a/sci-biology/foldingathome/files/6.24/folding-conf.d b/sci-biology/foldingathome/files/6.24/folding-conf.d new file mode 100644 index 000000000..af99fc1d6 --- /dev/null +++ b/sci-biology/foldingathome/files/6.24/folding-conf.d @@ -0,0 +1,21 @@ +# Config file for /etc/init.d/foldingathome +# +# The f@h client configuration can be found in /opt/foldingathome/client.cfg +# Run /opt/foldingathome/initfolding to reconfigure that. +# +# Enter options here to be passed to the Folding client: +# +# -oneunit Instruct the client to quit following the completion of one work unit. +# -verbosity x Sets the output level, from 1 to 9 (max). The default is 3 +# -forceasm Force core assembly optimizations to be used if available +# -advmethods Request to be assigned any new Cores or work units. +# -smp Set the client to run in SMP mode (multicore) +# +# A full listing of options can be found here: +# http://www.stanford.edu/group/pandegroup/folding/console-userguide.html +# But use of other options are not recommended when using the Folding client +# as a service. +# +FOLD_OPTS="" +PIDFILE=/var/run/folding + diff --git a/sci-biology/foldingathome/files/6.24/initfolding b/sci-biology/foldingathome/files/6.24/initfolding new file mode 100644 index 000000000..3f760a1e6 --- /dev/null +++ b/sci-biology/foldingathome/files/6.24/initfolding @@ -0,0 +1,6 @@ +#!/bin/sh + +cd /opt/foldingathome +/opt/foldingathome/fah6 -configonly +/bin/chown -R foldingathome:nogroup /opt/foldingathome + diff --git a/sci-biology/foldingathome/foldingathome-6.24.ebuild b/sci-biology/foldingathome/foldingathome-6.24.ebuild new file mode 100644 index 000000000..4c0685ce9 --- /dev/null +++ b/sci-biology/foldingathome/foldingathome-6.24.ebuild @@ -0,0 +1,56 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/foldingathome/foldingathome-6.24beta.ebuild,v 1.0 2009/05/10 splat Exp $ + +I="/opt/foldingathome" + +inherit eutils + +DESCRIPTION="Folding@Home is a distributed computing project for protein folding." +HOMEPAGE="http://folding.stanford.edu/FAQ-SMP.html" +SRC_URI="http://www.stanford.edu/group/pandegroup/folding/release/FAH6.24beta-Linux.tgz" + +LICENSE="folding-at-home" +SLOT="0" + +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND=">=sys-libs/glibc-2.3.0 + amd64? ( app-emulation/emul-linux-x86-baselibs )" + +RDEPEND="" + +S="${WORKDIR}" + +src_install() { + exeinto ${I} + newexe "${FILESDIR}"/${PV}/initfolding initfolding + doexe fah6 mpiexec + newconfd "${FILESDIR}"/${PV}/folding-conf.d foldingathome + newinitd "${FILESDIR}"/${PV}/fah-init foldingathome +} + +pkg_preinst() { + # the bash shell is important for "su -c" in init script + enewuser foldingathome -1 /bin/bash /opt/foldingathome +} + +pkg_postinst() { + chown -R foldingathome:nogroup /opt/foldingathome + einfo "To run Folding@home in the background at boot:" + einfo " rc-update add foldingathome default" + einfo "" + einfo "Please run ${I}/initfolding to configure your client" + einfo "and edit /etc/conf.d/foldingathome for options" + einfo "" + einfo "I encourage you to acquire a username and join team 36480." + einfo "http://folding.stanford.edu/English/Download#ntoc2" + einfo "" +} + +pkg_postrm() { + einfo "Folding@home data files were not removed." + einfo " Remove them manually from ${I}" + einfo "" +} diff --git a/sci-biology/foldingathome/metadata.xml b/sci-biology/foldingathome/metadata.xml new file mode 100644 index 000000000..34294c65c --- /dev/null +++ b/sci-biology/foldingathome/metadata.xml @@ -0,0 +1,5 @@ + + + +sci-biology + -- cgit v1.2.3-65-gdbad