From 05b20520d7eb65ba90e9582b7315c65d2f4234c1 Mon Sep 17 00:00:00 2001
From: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun, 23 Mar 2014 20:33:34 +0100
Subject: sci-biology/BBmap: a skeleton for a new package, needs help from java
 team for sure

---
 sci-biology/BBmap/BBmap-31.40.ebuild | 25 +++++++++++++++++++++++++
 sci-biology/BBmap/ChangeLog          | 11 +++++++++++
 sci-biology/BBmap/Manifest           |  1 +
 sci-biology/BBmap/metadata.xml       |  9 +++++++++
 4 files changed, 46 insertions(+)
 create mode 100644 sci-biology/BBmap/BBmap-31.40.ebuild
 create mode 100644 sci-biology/BBmap/ChangeLog
 create mode 100644 sci-biology/BBmap/Manifest
 create mode 100644 sci-biology/BBmap/metadata.xml

(limited to 'sci-biology/BBmap')

diff --git a/sci-biology/BBmap/BBmap-31.40.ebuild b/sci-biology/BBmap/BBmap-31.40.ebuild
new file mode 100644
index 000000000..959d062b5
--- /dev/null
+++ b/sci-biology/BBmap/BBmap-31.40.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-2 java-ant-2
+
+DESCRIPTION="Short read aligner, K-mer-based error-correction and normalization, FASTA/FASTQ conversion"
+HOMEPAGE="http://sourceforge.net/projects/bbmap/"
+SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java7.tar.gz"
+#SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java6.tar.gz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="
+	>=virtual/jdk-1.7
+	dev-java/ant-core"
+RDEPEND="${DEPEND}
+	>=virtual/jre-1.7"
+
+S="${WORKDIR}"/bbmap
diff --git a/sci-biology/BBmap/ChangeLog b/sci-biology/BBmap/ChangeLog
new file mode 100644
index 000000000..9a2750a95
--- /dev/null
+++ b/sci-biology/BBmap/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-biology/BBmap
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*BBmap-31.40 (23 Mar 2014)
+
+  23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +BBmap-31.40.ebuild, +metadata.xml:
+  sci-biology/BBmap: a skeleton for a new package, needs help from java team
+  for sure
+
diff --git a/sci-biology/BBmap/Manifest b/sci-biology/BBmap/Manifest
new file mode 100644
index 000000000..f1826f34f
--- /dev/null
+++ b/sci-biology/BBmap/Manifest
@@ -0,0 +1 @@
+DIST BBMap_31.40_java7.tar.gz 2971946 SHA256 f2ddbea680d9364b41245ff00f26c020ad7b7286080efcfab0e9f4bc187b64dc SHA512 609cc8600fbb4e6de82cd239dea66761daab0097fdb90ec6d04b11e49bc2eaa576c8102d140de7fb971aa1eb8629193cc44177802d71544bd1d3fc775bdfdb8e WHIRLPOOL 30beb865a98474bac7221b79109468738cc802df029dfffb4ccf04742dcf5770a3f1307792db5f3dea76c07940f540ec7331a28c9ef03031548d03e7d22c8187
diff --git a/sci-biology/BBmap/metadata.xml b/sci-biology/BBmap/metadata.xml
new file mode 100644
index 000000000..2bc893037
--- /dev/null
+++ b/sci-biology/BBmap/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>
-- 
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