From 33cea93a515d0fa559263ce382d76739bc4b4338 Mon Sep 17 00:00:00 2001
From: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed, 24 Jun 2015 16:14:54 +0200
Subject: sci-biology/RSeQC: new package

Package-Manager: portage-2.2.18
---
 sci-biology/RSeQC/ChangeLog          |  9 +++++++++
 sci-biology/RSeQC/Manifest           |  2 ++
 sci-biology/RSeQC/RSeQC-2.6.1.ebuild | 30 ++++++++++++++++++++++++++++++
 sci-biology/RSeQC/metadata.xml       |  9 +++++++++
 4 files changed, 50 insertions(+)
 create mode 100644 sci-biology/RSeQC/ChangeLog
 create mode 100644 sci-biology/RSeQC/Manifest
 create mode 100644 sci-biology/RSeQC/RSeQC-2.6.1.ebuild
 create mode 100644 sci-biology/RSeQC/metadata.xml

(limited to 'sci-biology/RSeQC')

diff --git a/sci-biology/RSeQC/ChangeLog b/sci-biology/RSeQC/ChangeLog
new file mode 100644
index 000000000..854e7ecdf
--- /dev/null
+++ b/sci-biology/RSeQC/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/RSeQC
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*RSeQC-2.6.1 (24 Jun 2015)
+
+  24 Jun 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +RSeQC-2.6.1.ebuild,
+  +metadata.xml:
+  sci-biology/RSeQC: new package
diff --git a/sci-biology/RSeQC/Manifest b/sci-biology/RSeQC/Manifest
new file mode 100644
index 000000000..6852e051a
--- /dev/null
+++ b/sci-biology/RSeQC/Manifest
@@ -0,0 +1,2 @@
+DIST RSeQC-2.6.1.tar.gz 1654756 SHA256 600c09fb5c85e6249030f019949a6e0e131230008fde363f1603444f8a009e96 SHA512 9adf44be989764c4095e91a4de76d5d96842956ff855392c11d644f99010c2e06ded80ab2373e636e59f544fb508839ea6d4ed6e202695ff31c42a68c1ceb86b WHIRLPOOL 9a4778a4f7c84ad7ee44a00149e09ad3c560a1dffc5e9be1edc810f69bc14c7e3bb184213434899eb8c4b0c98c227b31108c60b9615beb807d38a66349c4f0e6
+DIST fetchChromSizes 2695 SHA256 a349673d472edb2842298b6be1c13703c20e29d7a1dfd317f018b7e1d55f5ddc SHA512 23405beabb4f42b5cc5b569d9948d070e354ef2be10030b51ba3510865ab4e25bee8aab7283d9b6cbd7df454159a6f89e58ad8f5ee6a541046ad5a72f65019e8 WHIRLPOOL dc6b4d90e49db600ba83a7f60f3aa1665a4deb9cc016ceae3d9ccaa8a452965f4474c0550c0199d9b2f64c7805251943337f1c0691497539358751a41348005c
diff --git a/sci-biology/RSeQC/RSeQC-2.6.1.ebuild b/sci-biology/RSeQC/RSeQC-2.6.1.ebuild
new file mode 100644
index 000000000..a6cdfed4b
--- /dev/null
+++ b/sci-biology/RSeQC/RSeQC-2.6.1.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Utilities for RNA-seq data quality control"
+HOMEPAGE="http://rseqc.sourceforge.net"
+SRC_URI="http://sourceforge.net/projects/rseqc/files/RSeQC-2.6.1.tar.gz
+	http://sourceforge.net/projects/rseqc/files/other/fetchChromSizes"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="=sci-biology/pysam-0.7.5[${PYTHON_USEDEP}]"
+RDEPEND="${DEPEND}"
+
+# pysam (v0.7.5) was built in RSeQC. The latest version of pysam may not be compatible with RSeQC.
+
+python_install(){
+	distutils-r1_python_install
+	rm -r "${D}$(python_get_sitedir)"/pysam
+	dobin "${DISTDIR}"/fetchChromSizes
+}
diff --git a/sci-biology/RSeQC/metadata.xml b/sci-biology/RSeQC/metadata.xml
new file mode 100644
index 000000000..2bc893037
--- /dev/null
+++ b/sci-biology/RSeQC/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>
-- 
cgit v1.2.3-65-gdbad