From f1f6c31bb308f59777bb396827099ec71b4b35a1 Mon Sep 17 00:00:00 2001
From: Sergei Trofimovich <siarheit@google.com>
Date: Sun, 3 Apr 2016 16:34:21 +0100
Subject: sci-biology/abyss: fix automagic haskell deps, bug #534412
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

It's a ::gentoo change a50e1769e82e28dedb16083ac9136f17f9af2297

Reported-by: Toralf Förster
Bug: https://bugs.gentoo.org/534412

Package-Manager: portage-2.2.28
---
 sci-biology/abyss/abyss-1.3.6-r1.ebuild | 19 +++++++++++++++----
 1 file changed, 15 insertions(+), 4 deletions(-)

(limited to 'sci-biology/abyss/abyss-1.3.6-r1.ebuild')

diff --git a/sci-biology/abyss/abyss-1.3.6-r1.ebuild b/sci-biology/abyss/abyss-1.3.6-r1.ebuild
index f002a9578..a449c72dc 100644
--- a/sci-biology/abyss/abyss-1.3.6-r1.ebuild
+++ b/sci-biology/abyss/abyss-1.3.6-r1.ebuild
@@ -14,14 +14,21 @@ SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
 
 LICENSE="abyss"
 SLOT="0"
-IUSE="+mpi openmp"
+IUSE="+mpi openmp misc-haskell"
 KEYWORDS="~amd64 ~x86"
 
-DEPEND="
+RDEPEND="
 	dev-cpp/sparsehash
 	dev-libs/boost
-	mpi? ( virtual/mpi )"
-RDEPEND="${DEPEND}"
+	misc-haskell? ( dev-libs/gmp:0=
+			virtual/libffi:0=
+	)
+	mpi? ( virtual/mpi )
+"
+DEPEND="${RDEPEND}
+	misc-haskell? ( dev-lang/ghc
+			dev-haskell/mmap )
+"
 
 # todo: --enable-maxk=N configure option
 # todo: fix automagic mpi toggling
@@ -40,6 +47,10 @@ src_prepare() {
 }
 
 src_configure() {
+	# disable building haskell tool Misc/samtobreak
+	# unless request by user: bug #534412
+	use misc-haskell || export ac_cv_prog_ac_ct_GHC=
+
 	local myeconfargs=(
 		--docdir="${EPREFIX}/usr/share/doc/${PF}"
 		$(use_enable openmp)
-- 
cgit v1.2.3-65-gdbad