From cec8859662ffa14fd17eeb93abd6e9aeb0a088a6 Mon Sep 17 00:00:00 2001
From: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sun, 24 Jun 2018 10:28:22 +0200
Subject: sci-biology/bwa: version bump

Also fix HOMEPAGE which does not listen on https (anymore?)

Package-Manager: Portage-2.3.40, Repoman-2.3.9
---
 sci-biology/bwa/bwa-0.7.17.ebuild | 34 ++++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)
 create mode 100644 sci-biology/bwa/bwa-0.7.17.ebuild

(limited to 'sci-biology/bwa/bwa-0.7.17.ebuild')

diff --git a/sci-biology/bwa/bwa-0.7.17.ebuild b/sci-biology/bwa/bwa-0.7.17.ebuild
new file mode 100644
index 000000000..429ba43e6
--- /dev/null
+++ b/sci-biology/bwa/bwa-0.7.17.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit toolchain-funcs
+
+DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
+HOMEPAGE="http://bio-bwa.sourceforge.net/"
+SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86 ~x64-macos"
+
+RDEPEND="dev-lang/perl"
+
+PATCHES=( "${FILESDIR}"/${PN}-0.7.15-Makefile.patch )
+DOCS=( NEWS.md README-alt.md README.md )
+
+src_configure() {
+	tc-export CC AR
+}
+
+src_install() {
+	dobin bwa
+
+	exeinto /usr/libexec/${PN}
+	doexe qualfa2fq.pl xa2multi.pl
+
+	einstalldocs
+	doman bwa.1
+}
-- 
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