From 126501821553773450c537768063ddcd3961b7a3 Mon Sep 17 00:00:00 2001 From: Justin Lecher Date: Thu, 10 Mar 2011 12:28:00 +0100 Subject: Move to new embassy-ng.eclass (Portage version: 2.2.0_alpha26/git/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916) --- sci-biology/embassy-signature/ChangeLog | 95 +++++++++++++++++++++ sci-biology/embassy-signature/Manifest | 15 ++++ .../embassy-signature-0.1.0-r5.ebuild | 10 +++ .../files/embassy-signature-0.1.0-r5.patch | 99 ++++++++++++++++++++++ sci-biology/embassy-signature/metadata.xml | 5 ++ 5 files changed, 224 insertions(+) create mode 100644 sci-biology/embassy-signature/ChangeLog create mode 100644 sci-biology/embassy-signature/Manifest create mode 100644 sci-biology/embassy-signature/embassy-signature-0.1.0-r5.ebuild create mode 100644 sci-biology/embassy-signature/files/embassy-signature-0.1.0-r5.patch create mode 100644 sci-biology/embassy-signature/metadata.xml (limited to 'sci-biology/embassy-signature') diff --git a/sci-biology/embassy-signature/ChangeLog b/sci-biology/embassy-signature/ChangeLog new file mode 100644 index 000000000..709222cba --- /dev/null +++ b/sci-biology/embassy-signature/ChangeLog @@ -0,0 +1,95 @@ +# ChangeLog for sci-biology/embassy-signature +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/ChangeLog,v 1.19 2010/01/01 21:59:44 fauli Exp $ + +*embassy-signature-0.1.0-r5 (10 Mar 2011) + + 10 Mar 2011; Justin Lecher + +embassy-signature-0.1.0-r5.ebuild, +files/embassy-signature-0.1.0-r5.patch, + +metadata.xml: + Move to new embassy-ng.eclass + + 01 Jan 2010; Christian Faulhammer + embassy-signature-0.1.0-r4.ebuild: + Transfer Prefix keywords + + 01 Sep 2009; Olivier Fisette metadata.xml: + Giving up maintainership of this package. + +*embassy-signature-0.1.0-r4 (01 Sep 2009) + + 01 Sep 2009; Olivier Fisette + +embassy-signature-0.1.0-r4.ebuild: + Updated version for EMBASSY 6.1.0. + + 01 Sep 2009; Olivier Fisette + embassy-signature-0.1.0-r3.ebuild: + Stabilised on amd64 and x86. + + 27 Aug 2008; Olivier Fisette + -embassy-signature-0.1.0-r2.ebuild: + Pruning version that will never be stabilised. + +*embassy-signature-0.1.0-r3 (27 Aug 2008) + + 27 Aug 2008; Olivier Fisette + +embassy-signature-0.1.0-r3.ebuild: + New upstream version/package for EMBASSY 6.0.1. + +*embassy-signature-0.1.0-r2 (18 Jul 2007) + + 18 Jul 2007; Olivier Fisette + +embassy-signature-0.1.0-r2.ebuild: + New upstream packaging for EMBOSS 5.0.0. + + 16 Feb 2007; Jeff Gardner + embassy-signature-0.1.0-r1.ebuild: + Added ~amd64. + + 10 Dec 2006; Olivier Fisette + -embassy-signature-0.1.0.ebuild: + Pruning old version. + + 03 Nov 2006; nixnut embassy-signature-0.1.0-r1.ebuild: + Stable on ppc wrt bug 153766 + + 03 Nov 2006; Jeff Gardner + embassy-signature-0.1.0-r1.ebuild: + Added ~sparc + + 02 Nov 2006; Fabian Groffen + embassy-signature-0.1.0.ebuild, embassy-signature-0.1.0-r1.ebuild: + Dropped ppc-macos, see you in prefix. + + 02 Nov 2006; Olivier Fisette + embassy-signature-0.1.0-r1.ebuild: + Added to x86. + +*embassy-signature-0.1.0-r1 (21 Jul 2006) + + 21 Jul 2006; Olivier Fisette + +embassy-signature-0.1.0-r1.ebuild: + New upstream version building against EMBOSS 4.0.0. + + 21 Jul 2006; Olivier Fisette + embassy-signature-0.1.0.ebuild: + Fixed download URL (silent upstream repackaging). + + 03 Oct 2005; Olivier Fisette + embassy-signature-0.1.0.ebuild: + Stable on ppc-macos (with j4rg0n's permission, bug #102420). + + 02 Oct 2005; Michael Hanselmann + embassy-signature-0.1.0.ebuild: + Stable on ppc. + + 21 Sep 2005; Olivier Fisette + embassy-signature-0.1.0.ebuild: + Added to x86. + +*embassy-signature-0.1.0 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette +metadata.xml, + +embassy-signature-0.1.0.ebuild: + New import. This package is part of the EMBASSY 3.0.0 distribution. + diff --git a/sci-biology/embassy-signature/Manifest b/sci-biology/embassy-signature/Manifest new file mode 100644 index 000000000..f1ce173ba --- /dev/null +++ b/sci-biology/embassy-signature/Manifest @@ -0,0 +1,15 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +AUX embassy-signature-0.1.0-r5.patch 3014 RMD160 4b139ae6708b153c49de5060b0fd8119e8f339cd SHA1 b589310b684e15039378f476e21ebeeb9a4df78a SHA256 d6a23f1a178472e5ade44b5c9d56e36971e50c33df9a8abc683cfc97c33d1c5c +DIST embassy-6.3.1-signature-0.1.0.tar.gz 571008 RMD160 d69cbdeb8461d4f5596546dad9d1b7afc14df672 SHA1 bd9834fe0aeb7b6f6fd1a46550adc6be06d74566 SHA256 feaec1c3d3a8a2b98bb691137aa5ac099f7cef6579150fdb1429fcfc5db01024 +EBUILD embassy-signature-0.1.0-r5.ebuild 380 RMD160 41fa2ab3a3fedc695a2d83b59f2013d8238b8e90 SHA1 a34939f529150ed155610e8b8c1c5c39897b34c4 SHA256 9b95d414f985eb495d2978b46eb8dabd916be8dbbb19284b71783a7df221cbb9 +MISC ChangeLog 3076 RMD160 27f957c44916df9eaee77cde65d57d185d0c3f24 SHA1 e5ad014e487f7f8853368fc76ee6fe9b0cac8cce SHA256 59c59d00cd6569ea9cbac0d13573e6bcc7e4f11935c034c345a1b7ebff00d3c3 +MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.17 (GNU/Linux) + +iEYEARECAAYFAk14tcAACgkQgAnW8HDreRZQxQCgsvXCf+ucdV6TSkSLcdItD1PD +mq0An2coZr5CZaY4e0Br3+F7lAPh1J8c +=QGtK +-----END PGP SIGNATURE----- diff --git a/sci-biology/embassy-signature/embassy-signature-0.1.0-r5.ebuild b/sci-biology/embassy-signature/embassy-signature-0.1.0-r5.ebuild new file mode 100644 index 000000000..3e66485d9 --- /dev/null +++ b/sci-biology/embassy-signature/embassy-signature-0.1.0-r5.ebuild @@ -0,0 +1,10 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/embassy-signature-0.1.0-r4.ebuild,v 1.2 2010/01/01 21:59:44 fauli Exp $ + +EBOV="6.3.1" +EBO_DESCRIPTION="Protein signature add-on package" + +inherit embassy-ng + +KEYWORDS="~amd64 ~ppc ~x86 ~x86-linux ~ppc-macos" diff --git a/sci-biology/embassy-signature/files/embassy-signature-0.1.0-r5.patch b/sci-biology/embassy-signature/files/embassy-signature-0.1.0-r5.patch new file mode 100644 index 000000000..8b1b8da56 --- /dev/null +++ b/sci-biology/embassy-signature/files/embassy-signature-0.1.0-r5.patch @@ -0,0 +1,99 @@ +diff --git a/Makefile.am b/Makefile.am +index 6bfb6f0..d547b12 100644 +--- a/Makefile.am ++++ b/Makefile.am +@@ -1,5 +1,6 @@ + # + ++ACLOCAL_AMFLAGS = -I m4 + SUBDIRS = src emboss_acd emboss_doc + + EXTRA_DIST = depcomp ltmain.sh install-sh config.sub config.guess +diff --git a/configure.in b/configure.in +index 5175a14..445b008 100644 +--- a/configure.in ++++ b/configure.in +@@ -187,15 +187,6 @@ AC_PROG_INSTALL + AC_PROG_LN_S + AC_PROG_MAKE_SET + +-dnl Intel MacOSX 10.6 puts X11 in a non-standard place +-if test "${with_x}" != "no" ; then +-if test "`uname -a | grep Darwin`"; then +-OSXX=`sw_vers -productVersion | sed 's/\(10\.[[0-9]]*\).*/\1/'` +-if test ${OSXX} '>' '10.4'; then +-CFLAGS="$CFLAGS -I/usr/X11/include -L/usr/X11/lib" +-fi +-fi +-fi + + dnl Check for header files + AC_PATH_XTRA +@@ -250,8 +241,8 @@ AX_LIB_POSTGRESQL + CFLAGS="$CFLAGS $MYSQL_CFLAGS" + LDFLAGS="$LDFLAGS $MYSQL_LDFLAGS" + +-CFLAGS="$CFLAGS $POSTGRESQL_CFLAGS" +-LDFLAGS="$LDFLAGS $POSTGRESQL_LDFLAGS" ++CFLAGS="$POSTGRESQL_CFLAGS $CFLAGS" ++LDFLAGS="$POSTGRESQL_LDFLAGS $LDFLAGS" + + + dnl "Export" these variables for PCRE +@@ -388,9 +379,30 @@ AC_ARG_ENABLE(systemlibs, + AS_HELP_STRING([--enable-systemlibs], [Use system versions of zlib/expat])) + if test "${enable_systemlibs}" = "yes" ; then + have_systemlibs=yes ++ DEFINE_USE_SYSTEM_PCRE="#define" ++ PKG_CHECK_MODULES([PLPLOT], [plplotd]) ++ PKG_CHECK_MODULES([ZLIB], [zlib]) ++else ++ dnl X11 is only used by plplot ++ dnl Intel MacOSX 10.6 puts X11 in a non-standard place ++ if test "${with_x}" != "no" ; then ++ if test "`uname -a | grep Darwin`"; then ++ OSXX=`sw_vers -productVersion | sed 's/\(10\.[[0-9]]*\).*/\1/'` ++ if test ${OSXX} '>' '10.4'; then ++ CFLAGS="$CFLAGS -I/usr/X11/include -L/usr/X11/lib" ++ fi ++ fi ++ fi ++ if test "${with_x}" != "no" ; then ++ LF_EMBOSS_PATH_XLIB ++ fi ++ AC_MSG_NOTICE(USING bundled LIBS) + fi + AM_CONDITIONAL(ESYSTEMLIBS, test "$have_systemlibs" = "yes") + AC_SUBST(ESYSTEMLIBS) ++AC_SUBST(DEFINE_USE_SYSTEM_PCRE) ++AC_SUBST(PLPLOT_CFLAGS) ++AC_SUBST(PLPLOT_LIBS) + + + +diff --git a/src/Makefile.am b/src/Makefile.am +index d06f78d..d273b16 100644 +--- a/src/Makefile.am ++++ b/src/Makefile.am +@@ -17,9 +17,9 @@ INCLUDES = -I../../../nucleus -I../../../ajax/pcre \ + -I../../../ajax/ensembl -I../../../ajax/ajaxdb \ + -I../../../ajax/acd -I../../../plplot + else +-INCLUDES = -I${embprefix}/include -I${embprefix}/include/eplplot \ +- $(NLINCLUDES) \ +- -I${embprefix}/include/epcre ++INCLUDES = -I${embprefix}/include $(PLPLOT_CFLAGS) \ ++ $(NLINCLUDES) -I${embprefix}/include/emboss \ ++ -I${embprefix}/include/pcre + endif + + if ISSHARED +@@ -67,6 +67,6 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \ + ../../../plplot/libeplplot.la \ + $(XLIB) + else +-LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ +- -lajax -lepcre $(NLADD) -leplplot $(XLIB) ++LDADD = -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ ++ -lajax -lpcre $(NLADD) $(PLPLOT_LIBS) $(XLIB) + endif diff --git a/sci-biology/embassy-signature/metadata.xml b/sci-biology/embassy-signature/metadata.xml new file mode 100644 index 000000000..d4648212c --- /dev/null +++ b/sci-biology/embassy-signature/metadata.xml @@ -0,0 +1,5 @@ + + + + sci-biology + -- cgit v1.2.3-65-gdbad