From ad92a5eb433a0fb192941f68378da0311257a4ed Mon Sep 17 00:00:00 2001
From: tulku <tulku@32389bae-6d03-0410-99cf-db05cde120eb>
Date: Wed, 19 Apr 2006 16:28:39 +0000
Subject: Adding ebuild for generecon

git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@177 32389bae-6d03-0410-99cf-db05cde120eb
---
 sci-biology/generecon/ChangeLog                    | 10 ++++++
 sci-biology/generecon/Manifest                     |  5 +++
 .../generecon/files/digest-generecon-1.2.1-r1      |  1 +
 .../generecon/files/generecon-docfiles.patch       | 12 +++++++
 sci-biology/generecon/generecon-1.2.1-r1.ebuild    | 42 ++++++++++++++++++++++
 sci-biology/generecon/metadata.xml                 |  9 +++++
 6 files changed, 79 insertions(+)
 create mode 100644 sci-biology/generecon/ChangeLog
 create mode 100644 sci-biology/generecon/Manifest
 create mode 100644 sci-biology/generecon/files/digest-generecon-1.2.1-r1
 create mode 100644 sci-biology/generecon/files/generecon-docfiles.patch
 create mode 100644 sci-biology/generecon/generecon-1.2.1-r1.ebuild
 create mode 100644 sci-biology/generecon/metadata.xml

(limited to 'sci-biology/generecon')

diff --git a/sci-biology/generecon/ChangeLog b/sci-biology/generecon/ChangeLog
new file mode 100644
index 000000000..ff5a98428
--- /dev/null
+++ b/sci-biology/generecon/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/generecon
+# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*generecon-1.2.1 (19 Apr 2006)
+
+  19 Apr 2006; Lucas Chiesa <lucas.chiesa@gmail.com>:
+  +generecon-1.2.1.ebuild, +metadata.xml, +ChangeLog,
+  Initial import. Thanks to Neil <nshephard@gmail.com>
+  for the initial ebuild. Closes bug #128514.
diff --git a/sci-biology/generecon/Manifest b/sci-biology/generecon/Manifest
new file mode 100644
index 000000000..035bd9dc9
--- /dev/null
+++ b/sci-biology/generecon/Manifest
@@ -0,0 +1,5 @@
+MD5 29a1e620d057818eb5edbc12f4c1f9ac ChangeLog 363
+MD5 2d5ea95a11b70d1869473dd8b3ccac1d files/digest-generecon-1.2.1-r1 67
+MD5 537dc4e80ebe82b913290cfc7a0f6144 files/generecon-docfiles.patch 435
+MD5 cbab1ca1555a5dd5c6196f8399eb1dfe generecon-1.2.1-r1.ebuild 1092
+MD5 5cfd1e62f34b60928bc68a829d31d4eb metadata.xml 261
diff --git a/sci-biology/generecon/files/digest-generecon-1.2.1-r1 b/sci-biology/generecon/files/digest-generecon-1.2.1-r1
new file mode 100644
index 000000000..3cb50a9a3
--- /dev/null
+++ b/sci-biology/generecon/files/digest-generecon-1.2.1-r1
@@ -0,0 +1 @@
+MD5 bda6f2a7c40ddbe5f694050a299ef6a4 generecon-1.2.1.tar.gz 238270
diff --git a/sci-biology/generecon/files/generecon-docfiles.patch b/sci-biology/generecon/files/generecon-docfiles.patch
new file mode 100644
index 000000000..79d63e73f
--- /dev/null
+++ b/sci-biology/generecon/files/generecon-docfiles.patch
@@ -0,0 +1,12 @@
+diff -Nuar generecon-1.2.1.orig/Makefile.am generecon-1.2.1/Makefile.am
+--- generecon-1.2.1.orig/Makefile.am	2006-04-19 12:52:18.000000000 -0300
++++ generecon-1.2.1/Makefile.am	2006-04-19 12:55:53.000000000 -0300
+@@ -31,7 +31,7 @@
+ bin_PROGRAMS     = generecon
+ 
+ 
+-docdir = ${prefix}/share/generecon/doc
++docdir = ${prefix}/share/doc/#PF#
+ dist_doc_DATA =
+ test_inputdir = ${prefix}/share/generecon/test-input
+ dist_test_input_DATA =
diff --git a/sci-biology/generecon/generecon-1.2.1-r1.ebuild b/sci-biology/generecon/generecon-1.2.1-r1.ebuild
new file mode 100644
index 000000000..61d4c699c
--- /dev/null
+++ b/sci-biology/generecon/generecon-1.2.1-r1.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+inherit eutils
+
+DESCRIPTION="Generecon performs linkage disequilibrium gene mapping based on coalescent theory using Bayesian Markov Chain Monte Carlo methods."
+HOMEPAGE="http://www.daimi.au.dk/~mailund/GeneRecon/"
+SRC_URI="http://www.daimi.au.dk/~mailund/GeneRecon/download/${P}.tar.gz"
+SLOT="0"
+
+# License of the package.  This must match the name of file(s) in
+# /usr/portage/licenses/.  For complex license combination see the developer
+# docs on gentoo.org for details.
+LICENSE="GPL-2"
+
+KEYWORDS="x86"
+
+DEPEND="dev-util/guile
+        sci-libs/gsl"
+
+src_unpack() {
+	unpack ${A}
+	sed 's|#PF#|'${PF}'|g' ${FILESDIR}/${PN}-docfiles.patch > ${PN}-docfiles.patch
+
+	epatch ${PN}-docfiles.patch
+
+	cd ${S}
+	pwd
+	einfo "Regenerating autotools files..."
+	aclocal || die "aclocal failed"
+	automake || die "automake failed"
+}
+
+src_compile() {
+	econf || die "econf failed"
+	emake || die "emake failed"
+}
+
+src_install() {
+	make DESTDIR=${D} install  || die "make install failed"
+}
diff --git a/sci-biology/generecon/metadata.xml b/sci-biology/generecon/metadata.xml
new file mode 100644
index 000000000..963198591
--- /dev/null
+++ b/sci-biology/generecon/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci</herd>
+  <maintainer>
+    <email>lucas.chiesa@gmail.com</email>
+    <name>Lucas Chiesa</name>
+  </maintainer>
+</pkgmetadata>
-- 
cgit v1.2.3-65-gdbad