From 4f86aedbcbd2669eb91f62364c7661a384629e11 Mon Sep 17 00:00:00 2001
From: Martin Mokrejs <mmokrejs@gmail.com>
Date: Mon, 18 Oct 2021 13:25:09 +0200
Subject: sci-biology/longstitch: new package

A simple Makefile to run all the dependencies at once.

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
---
 sci-biology/longstitch/Manifest                |  1 +
 sci-biology/longstitch/longstitch-1.0.1.ebuild | 28 ++++++++++++++++++++++++++
 sci-biology/longstitch/metadata.xml            | 12 +++++++++++
 3 files changed, 41 insertions(+)
 create mode 100644 sci-biology/longstitch/Manifest
 create mode 100644 sci-biology/longstitch/longstitch-1.0.1.ebuild
 create mode 100644 sci-biology/longstitch/metadata.xml

(limited to 'sci-biology')

diff --git a/sci-biology/longstitch/Manifest b/sci-biology/longstitch/Manifest
new file mode 100644
index 000000000..2327cd7d4
--- /dev/null
+++ b/sci-biology/longstitch/Manifest
@@ -0,0 +1 @@
+DIST longstitch-1.0.1.tar.gz 7190631 BLAKE2B 29ea35de8ccebc1b5525edd483ac19dca217424b101f5b80b87d52947fb8ec401d6aa1ad9cb4650dbacfaf3f1a00ae79ab8070de3b624cc6bcf5ce721852bec8 SHA512 da2f3837e9be6dee5fffe29b99665c456607d69aa405069fe3a977e55b9063108871b99b8a2a8f017597e7fa3553084694170f5b6bf301c37218ed1dabfd3ee3
diff --git a/sci-biology/longstitch/longstitch-1.0.1.ebuild b/sci-biology/longstitch/longstitch-1.0.1.ebuild
new file mode 100644
index 000000000..787c3219b
--- /dev/null
+++ b/sci-biology/longstitch/longstitch-1.0.1.ebuild
@@ -0,0 +1,28 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads"
+HOMEPAGE="https://github.com/bcgsc/LongStitch"
+SRC_URI="https://github.com/bcgsc/LongStitch/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+RESTRICT="test"
+
+RDEPEND="
+	sci-biology/abyss
+	sci-biology/tigmint
+	sci-biology/LINKS
+	sci-biology/samtools
+"
+
+S="${WORKDIR}"/LongStitch-"${PV}"
+
+src_install(){
+	dobin longstitch
+	dodoc README.md LongStitch_overview.pdf
+}
diff --git a/sci-biology/longstitch/metadata.xml b/sci-biology/longstitch/metadata.xml
new file mode 100644
index 000000000..138cb7705
--- /dev/null
+++ b/sci-biology/longstitch/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>Gentoo Biology Project</name>
+	</maintainer>
+</pkgmetadata>
-- 
cgit v1.2.3-18-g5258