From b9e06f46a3f5f869f54182fd19a01dffa34f4309 Mon Sep 17 00:00:00 2001
From: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Thu, 12 Apr 2018 09:29:17 +0200
Subject: sci-biology/genometools: bump to 1.5.10

https://github.com/genometools/genometools/blob/master/CHANGELOG

changes in version 1.5.10 (2017-08-04)

- bugfixes and cleanups
- add Readjoiner output in GFA format
- improve building on GCC 7
- add arbitrary N values for `gt seqstat`
- install gtdata into $PREFIX/share/genometools by default
- improve robustness of test suite
- add Travis tests for Mac OS X
- `gt seed_extend` now speaks GFA2
- improvements to `gt seed_extend` w.r.t. runtime and
  output format
- new implementation of functionality for computing
  E-values for local alignments according to the
Karlin-Altschul statistics

Package-Manager: Portage-2.3.27, Repoman-2.3.9
---
 sci-biology/genometools/Manifest                  |  2 +-
 sci-biology/genometools/genometools-1.5.10.ebuild | 24 +++++++++++++++++++++++
 sci-biology/genometools/genometools-1.5.9.ebuild  | 24 -----------------------
 3 files changed, 25 insertions(+), 25 deletions(-)
 create mode 100644 sci-biology/genometools/genometools-1.5.10.ebuild
 delete mode 100644 sci-biology/genometools/genometools-1.5.9.ebuild

(limited to 'sci-biology')

diff --git a/sci-biology/genometools/Manifest b/sci-biology/genometools/Manifest
index ab58b8ad3..64902c5ad 100644
--- a/sci-biology/genometools/Manifest
+++ b/sci-biology/genometools/Manifest
@@ -1 +1 @@
-DIST genometools-1.5.9.tar.gz 13344855 BLAKE2B 0cc62fbd460456159c5c2e5808707574a3fdbc973c64eeea370258b94048952d1a0b4389f3d0ae09b3d73641712c97c785293c7e9704dcb77ce86050ec5a105e SHA512 366b5c5d9fb7fd0a910a7d6d34912c07e65c88fb2acf3a911e49de909a345fb891b9f5433accf6738e99fefe390c42f2429f9c262ae3368313d2226680168690
+DIST genometools-1.5.10.tar.gz 13621729 BLAKE2B ba102a3b7503d2ea6507b3d9cf05ee6801f8638252ec9d373db1fddb6a615330946a81c9099097bc1e13151f57590a49055a1a41035b355f45ae99583b12af66 SHA512 4b1fa67a27f172b644e8b97b5e454ac715b9cefcfa5fb2e901e3ae06fe0ff22262c156c3ac2ffa576b198fd7f2550e6da3321b72d1a9ae34f5ddfd76499a7233
diff --git a/sci-biology/genometools/genometools-1.5.10.ebuild b/sci-biology/genometools/genometools-1.5.10.ebuild
new file mode 100644
index 000000000..23fe474e2
--- /dev/null
+++ b/sci-biology/genometools/genometools-1.5.10.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DESCRIPTION="Tools for bioinformatics (Tallymer, Readjoiner, gff3validator, ...)"
+HOMEPAGE="http://genometools.org"
+SRC_URI="http://genometools.org/pub/${P}.tar.gz"
+
+LICENSE="ICS"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="
+	dev-libs/glib
+	x11-libs/pango
+	x11-libs/cairo"
+RDEPEND="${DEPEND}"
+
+src_prepare(){
+	sed -e "s#/usr/local#"${EPREFIX}"/usr#" -i Makefile || die
+	eapply_user
+}
diff --git a/sci-biology/genometools/genometools-1.5.9.ebuild b/sci-biology/genometools/genometools-1.5.9.ebuild
deleted file mode 100644
index 23fe474e2..000000000
--- a/sci-biology/genometools/genometools-1.5.9.ebuild
+++ /dev/null
@@ -1,24 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="Tools for bioinformatics (Tallymer, Readjoiner, gff3validator, ...)"
-HOMEPAGE="http://genometools.org"
-SRC_URI="http://genometools.org/pub/${P}.tar.gz"
-
-LICENSE="ICS"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="
-	dev-libs/glib
-	x11-libs/pango
-	x11-libs/cairo"
-RDEPEND="${DEPEND}"
-
-src_prepare(){
-	sed -e "s#/usr/local#"${EPREFIX}"/usr#" -i Makefile || die
-	eapply_user
-}
-- 
cgit v1.2.3-65-gdbad