From 7dcd6ac42bf4938cc892c4f57b242fb5ae093d9c Mon Sep 17 00:00:00 2001 From: "Justin Lecher (jlec)" Date: Sat, 6 Feb 2010 01:46:32 +0100 Subject: InCvs --- sci-chemistry/molrep/ChangeLog | 46 --------------- sci-chemistry/molrep/Manifest | 28 ---------- .../molrep/files/10.2.27-respect-FLAGS.patch | 61 -------------------- .../molrep/files/10.2.32-respect-FLAGS.patch | 61 -------------------- .../molrep/files/10.2.33-respect-FLAGS.patch | 61 -------------------- .../molrep/files/10.2.34-respect-FLAGS.patch | 61 -------------------- .../molrep/files/10.2.35-respect-FLAGS.patch | 61 -------------------- sci-chemistry/molrep/metadata.xml | 11 ---- sci-chemistry/molrep/molrep-10.2.27.ebuild | 55 ------------------ sci-chemistry/molrep/molrep-10.2.32.ebuild | 55 ------------------ sci-chemistry/molrep/molrep-10.2.33.ebuild | 55 ------------------ sci-chemistry/molrep/molrep-10.2.34.ebuild | 55 ------------------ sci-chemistry/molrep/molrep-10.2.35.ebuild | 65 ---------------------- 13 files changed, 675 deletions(-) delete mode 100644 sci-chemistry/molrep/ChangeLog delete mode 100644 sci-chemistry/molrep/Manifest delete mode 100644 sci-chemistry/molrep/files/10.2.27-respect-FLAGS.patch delete mode 100644 sci-chemistry/molrep/files/10.2.32-respect-FLAGS.patch delete mode 100644 sci-chemistry/molrep/files/10.2.33-respect-FLAGS.patch delete mode 100644 sci-chemistry/molrep/files/10.2.34-respect-FLAGS.patch delete mode 100644 sci-chemistry/molrep/files/10.2.35-respect-FLAGS.patch delete mode 100644 sci-chemistry/molrep/metadata.xml delete mode 100644 sci-chemistry/molrep/molrep-10.2.27.ebuild delete mode 100644 sci-chemistry/molrep/molrep-10.2.32.ebuild delete mode 100644 sci-chemistry/molrep/molrep-10.2.33.ebuild delete mode 100644 sci-chemistry/molrep/molrep-10.2.34.ebuild delete mode 100644 sci-chemistry/molrep/molrep-10.2.35.ebuild (limited to 'sci-chemistry') diff --git a/sci-chemistry/molrep/ChangeLog b/sci-chemistry/molrep/ChangeLog deleted file mode 100644 index b2485cead..000000000 --- a/sci-chemistry/molrep/ChangeLog +++ /dev/null @@ -1,46 +0,0 @@ -# ChangeLog for sci-chemistry/molrep -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - - 19 Oct 2009; Justin Lecher (jlec) - molrep-10.2.35.ebuild, metadata.xml: - src_test enhanced and extra-test USE added for extra-long testing - -*molrep-10.2.35 (17 Oct 2009) - - 17 Oct 2009; Justin Lecher (jlec) - +files/10.2.35-respect-FLAGS.patch, +molrep-10.2.35.ebuild: - version bump - QA missing sci-libs/mmdb as RDEPEND added - -*molrep-10.2.34 (02 Oct 2009) - - 02 Oct 2009; Justin Lecher (jlec) - +files/10.2.34-respect-FLAGS.patch, +molrep-10.2.34.ebuild: - version bump - -*molrep-10.2.33 (29 Jul 2009) - - 29 Jul 2009; Justin Lecher (jlec) - -files/10.2.24-respect-FLAGS.patchbak, +molrep-10.2.33.ebuild, - +files/10.2.33-respect-FLAGS.patch: - version bump - -*molrep-10.2.32 (01 Jul 2009) - - 01 Jul 2009; Justin Lecher (jlec) - +files/10.2.32-respect-FLAGS.patch, molrep-10.2.27.ebuild, - +molrep-10.2.32.ebuild: - bumpwhich will be included by upstream in the ccp4 6.1.2 release - - 27 Apr 2009; Justin Lecher (jlec) - molrep-10.2.27.ebuild: - fixed outstanding things - -*molrep-10.2.24 (27 Feb 2009) - - 27 Feb 2009; Justin Lecher (jlec) - +files/10.2.24-respect-FLAGS.patch, +files/10.2.24-respect-FLAGS.patchbak, - +metadata.xml, +molrep-10.2.24.ebuild: - Initial checkin - diff --git a/sci-chemistry/molrep/Manifest b/sci-chemistry/molrep/Manifest deleted file mode 100644 index 0ca359809..000000000 --- a/sci-chemistry/molrep/Manifest +++ /dev/null @@ -1,28 +0,0 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - -AUX 10.2.27-respect-FLAGS.patch 2376 RMD160 d11071cc402375b2376b6202f960b6f909d1b8df SHA1 7c1ea85188776bbf1054ef18efd55c04343ba187 SHA256 30b55e61663e217c1ee5ef12fe9954046016e303f77f9ff52caa6959c3e3eaa5 -AUX 10.2.32-respect-FLAGS.patch 2368 RMD160 4f24b345f0c78de0c0222abfef987d61fe1356d0 SHA1 bc445d646208de7e879a5989b66296fd89b2fc96 SHA256 809d9f290a1eb59b8fc5904328e72c30b65d3be821a61a1bff050bc446bdc991 -AUX 10.2.33-respect-FLAGS.patch 2368 RMD160 4f24b345f0c78de0c0222abfef987d61fe1356d0 SHA1 bc445d646208de7e879a5989b66296fd89b2fc96 SHA256 809d9f290a1eb59b8fc5904328e72c30b65d3be821a61a1bff050bc446bdc991 -AUX 10.2.34-respect-FLAGS.patch 2368 RMD160 4f24b345f0c78de0c0222abfef987d61fe1356d0 SHA1 bc445d646208de7e879a5989b66296fd89b2fc96 SHA256 809d9f290a1eb59b8fc5904328e72c30b65d3be821a61a1bff050bc446bdc991 -AUX 10.2.35-respect-FLAGS.patch 2368 RMD160 4f24b345f0c78de0c0222abfef987d61fe1356d0 SHA1 bc445d646208de7e879a5989b66296fd89b2fc96 SHA256 809d9f290a1eb59b8fc5904328e72c30b65d3be821a61a1bff050bc446bdc991 -DIST molrep-10.2.27.tar.gz 3595088 RMD160 6e36b6bf992fb306b67de6e483a3487c5fc21da3 SHA1 04d1ecdbd62498703d3c9f3a7d31659074f75c66 SHA256 85c15c827936540134ab65ea9de5a13faa789edeea0f39f65ec1b319ca43c42a -DIST molrep-10.2.32.tar.gz 3601054 RMD160 bc71b85de92871d540073b1df48e4df7be843a5a SHA1 514a902306bfdb606a4975f95a31859392ff51f7 SHA256 d6736d11cef2638eb4534d65c31871396d3404c8a3011d55bad81fecd810a8b7 -DIST molrep-10.2.33.tar.gz 3601162 RMD160 c75d3512b070c6cff186c8faf93c02a927c0f314 SHA1 1ae001f9fa07c11487ff9c0d9f7f393f119d58a5 SHA256 3df04892a46e21061b9138dd57879741abecddf18bef45c9a98391a8739d589a -DIST molrep-10.2.34.tar.gz 3601494 RMD160 099dbd8a24204957cdf6432f55de392a5951f667 SHA1 ee089279324e3eeb21044a7e61c4850650c659a8 SHA256 44aae53a61b70bb5c780a0a1ffeff25cc5b1e73387b1fbff9ef88646e2fd78e7 -DIST molrep-10.2.35.tar.gz 6811806 RMD160 d57247bd5b0b56ab37d8a8f165c965061fab0ddd SHA1 4c93f4d4879c678e010741d2a0f06fa4f07e5ccd SHA256 ab51428c6c96ea03ced48d87236e163e7f24ee9ed03d012467188bc91c991ed9 -DIST test-framework.tar.gz 130933173 RMD160 7122539dc713615dca2ddaddfd8d152cd22624d0 SHA1 1d3e3019a67afb9b2346e919c859d402d3250fea SHA256 df050a2a29da80518cb0616a0bbeb82298ea0721549348d15353bf0f66240605 -EBUILD molrep-10.2.27.ebuild 1160 RMD160 b1f07fbe73c3b00b494fc18e1b9a267e2c575a3d SHA1 4c134783e6212b7d36a90d8f8237b71bc54ee31e SHA256 81e4901a4e5fb86e1af154de28eac6be0c4c142b4d145a9e4c054ac2b342e15b -EBUILD molrep-10.2.32.ebuild 1160 RMD160 760335990f17b01524937e009f6841c452cce60b SHA1 fbcb65b2d613ce8e6e2b3e224155ef34c8e938a9 SHA256 d064d9b69c369a810330bad8c1e549649d0c35799082f3f14f2ec93a45389d4a -EBUILD molrep-10.2.33.ebuild 1160 RMD160 760335990f17b01524937e009f6841c452cce60b SHA1 fbcb65b2d613ce8e6e2b3e224155ef34c8e938a9 SHA256 d064d9b69c369a810330bad8c1e549649d0c35799082f3f14f2ec93a45389d4a -EBUILD molrep-10.2.34.ebuild 1160 RMD160 760335990f17b01524937e009f6841c452cce60b SHA1 fbcb65b2d613ce8e6e2b3e224155ef34c8e938a9 SHA256 d064d9b69c369a810330bad8c1e549649d0c35799082f3f14f2ec93a45389d4a -EBUILD molrep-10.2.35.ebuild 1589 RMD160 86be11e26ca1958ec6d2827d79e172d56d95f6f7 SHA1 173113b3ef1b94a616326cfeb0183c41df193d69 SHA256 3343e9595430f21f439bd9d5ed8e011697d66c18bd2467094f3899c01aa1c0c6 -MISC ChangeLog 1447 RMD160 6c35f05f2349843a123724199aa309d542865b1f SHA1 b442862c7a83fd499b51071bb6d48c04cb9bcc5b SHA256 72aa41aaf3b82573798717d44e3ca5d0a2e3efe62ef4964c2a6fbdf987baec05 -MISC metadata.xml 277 RMD160 e4a39be8dfe1af016270920b1e7fdeb371ceae68 SHA1 0427ea15be8e9ebd7ff7aecebe04b46af7800944 SHA256 9abff0eaee2eecf22cc059c2d41f99b856d8147c2b45f40e1572dc42610ed38a ------BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.11 (GNU/Linux) - -iEYEARECAAYFAkrcneYACgkQgAnW8HDreRZ1NQCgsQFJ73L0rC6e84TDGFt7i163 -LRYAoMqWM6XUzc4Y5OASGsLgIfur4wju -=L0yj ------END PGP SIGNATURE----- diff --git a/sci-chemistry/molrep/files/10.2.27-respect-FLAGS.patch b/sci-chemistry/molrep/files/10.2.27-respect-FLAGS.patch deleted file mode 100644 index 137d62d5e..000000000 --- a/sci-chemistry/molrep/files/10.2.27-respect-FLAGS.patch +++ /dev/null @@ -1,61 +0,0 @@ ---- src/makefile 2009-02-27 16:51:46.492890717 +0100 -+++ src/makefile.new 2009-02-27 16:52:18.295619642 +0100 -@@ -5,8 +5,8 @@ - - BIN = $(MOLREP)/bin - --OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym.o molrep_unix.o --OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym.o molrep_unix.o -+OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym_ccp4.o molrep_unix_ccp4.o -+OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym_ccp4.o molrep_unix_ccp4.o - - - all: molrep -@@ -19,31 +19,31 @@ - # ----------------------------- - - molrep.o: molrep.f -- $(MR_FORT) -c molrep.f -+ $(MR_FORT) $(FFLAGS) -c molrep.f - molrep1.o: molrep1.f -- $(MR_FORT) -c molrep1.f -+ $(MR_FORT) $(FFLAGS) -c molrep1.f - molrep2.o: molrep2.f -- $(MR_FORT) -c molrep2.f -+ $(MR_FORT) $(FFLAGS) -c molrep2.f - molrep3.o: molrep3.f -- $(MR_FORT) -c molrep3.f -+ $(MR_FORT) $(FFLAGS) -c molrep3.f - molrep_prog.o: molrep_prog.f -- $(MR_FORT) -c molrep_prog.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog.f - molrep_prog1.o: molrep_prog1.f -- $(MR_FORT) -c molrep_prog1.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog1.f - molrep_prog2.o: molrep_prog2.f -- $(MR_FORT) -c molrep_prog2.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog2.f - molrep_subr.o: molrep_subr.f -- $(MR_FORT) -c molrep_subr.f --molrep_sym.o: molrep_sym.f -- $(MR_FORT) -c molrep_sym.f -+ $(MR_FORT) $(FFLAGS) -c molrep_subr.f -+molrep_sym_ccp4.o: molrep_sym.f -+ $(MR_FORT) $(FFLAGS) -c molrep_sym_ccp4.f - main_molrep_mtz.o: main_molrep_mtz.f molrep_version.fh molrep_keywords.fh -- $(MR_FORT) -c main_molrep_mtz.f --molrep_unix.o: molrep_unix.f -- $(MR_FORT) -c molrep_unix.f -+ $(MR_FORT) $(FFLAGS) -c main_molrep_mtz.f -+molrep_unix_ccp4.o: molrep_unix.f -+ $(MR_FORT) $(FFLAGS) -c molrep_unix_ccp4.f - molrep_dummy.o: molrep_dummy.f -- $(MR_FORT) -c molrep_dummy.f -+ $(MR_FORT) $(FFLAGS) -c molrep_dummy.f - - molrep: $(OBJS) -- $(MR_FORT) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) -+ $(MR_FORT) $(FFLAGS) $(LDFLAGS) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) -lccp4c - - # -------------------------------- - diff --git a/sci-chemistry/molrep/files/10.2.32-respect-FLAGS.patch b/sci-chemistry/molrep/files/10.2.32-respect-FLAGS.patch deleted file mode 100644 index d81ec793b..000000000 --- a/sci-chemistry/molrep/files/10.2.32-respect-FLAGS.patch +++ /dev/null @@ -1,61 +0,0 @@ ---- src/makefile 2009-02-27 16:51:46.492890717 +0100 -+++ src/makefile.new 2009-02-27 16:52:18.295619642 +0100 -@@ -5,8 +5,8 @@ - - BIN = $(MOLREP)/bin - --OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym.o molrep_unix.o --OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym.o molrep_unix.o -+OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym_ccp4.o molrep_unix_ccp4.o -+OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym_ccp4.o molrep_unix_ccp4.o - - - all: molrep -@@ -19,31 +19,31 @@ - # ----------------------------- - - molrep.o: molrep.f -- $(MR_FORT) -c molrep.f -+ $(MR_FORT) $(FFLAGS) -c molrep.f - molrep1.o: molrep1.f -- $(MR_FORT) -c molrep1.f -+ $(MR_FORT) $(FFLAGS) -c molrep1.f - molrep2.o: molrep2.f -- $(MR_FORT) -c molrep2.f -+ $(MR_FORT) $(FFLAGS) -c molrep2.f - molrep3.o: molrep3.f -- $(MR_FORT) -c molrep3.f -+ $(MR_FORT) $(FFLAGS) -c molrep3.f - molrep_prog.o: molrep_prog.f -- $(MR_FORT) -c molrep_prog.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog.f - molrep_prog1.o: molrep_prog1.f -- $(MR_FORT) -c molrep_prog1.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog1.f - molrep_prog2.o: molrep_prog2.f -- $(MR_FORT) -c molrep_prog2.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog2.f - molrep_subr.o: molrep_subr.f -- $(MR_FORT) -c molrep_subr.f --molrep_sym.o: molrep_sym.f -- $(MR_FORT) -c molrep_sym.f -+ $(MR_FORT) $(FFLAGS) -c molrep_subr.f -+molrep_sym_ccp4.o: molrep_sym.f -+ $(MR_FORT) $(FFLAGS) -c molrep_sym_ccp4.f - main_molrep_mtz.o: main_molrep_mtz.f molrep_version.fh molrep_keywords.fh -- $(MR_FORT) -c main_molrep_mtz.f --molrep_unix.o: molrep_unix.f -- $(MR_FORT) -c molrep_unix.f -+ $(MR_FORT) $(FFLAGS) -c main_molrep_mtz.f -+molrep_unix_ccp4.o: molrep_unix.f -+ $(MR_FORT) $(FFLAGS) -c molrep_unix_ccp4.f - molrep_dummy.o: molrep_dummy.f -- $(MR_FORT) -c molrep_dummy.f -+ $(MR_FORT) $(FFLAGS) -c molrep_dummy.f - - molrep: $(OBJS) -- $(MR_FORT) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) -+ $(MR_FORT) $(FFLAGS) $(LDFLAGS) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) - - # -------------------------------- - diff --git a/sci-chemistry/molrep/files/10.2.33-respect-FLAGS.patch b/sci-chemistry/molrep/files/10.2.33-respect-FLAGS.patch deleted file mode 100644 index d81ec793b..000000000 --- a/sci-chemistry/molrep/files/10.2.33-respect-FLAGS.patch +++ /dev/null @@ -1,61 +0,0 @@ ---- src/makefile 2009-02-27 16:51:46.492890717 +0100 -+++ src/makefile.new 2009-02-27 16:52:18.295619642 +0100 -@@ -5,8 +5,8 @@ - - BIN = $(MOLREP)/bin - --OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym.o molrep_unix.o --OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym.o molrep_unix.o -+OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym_ccp4.o molrep_unix_ccp4.o -+OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym_ccp4.o molrep_unix_ccp4.o - - - all: molrep -@@ -19,31 +19,31 @@ - # ----------------------------- - - molrep.o: molrep.f -- $(MR_FORT) -c molrep.f -+ $(MR_FORT) $(FFLAGS) -c molrep.f - molrep1.o: molrep1.f -- $(MR_FORT) -c molrep1.f -+ $(MR_FORT) $(FFLAGS) -c molrep1.f - molrep2.o: molrep2.f -- $(MR_FORT) -c molrep2.f -+ $(MR_FORT) $(FFLAGS) -c molrep2.f - molrep3.o: molrep3.f -- $(MR_FORT) -c molrep3.f -+ $(MR_FORT) $(FFLAGS) -c molrep3.f - molrep_prog.o: molrep_prog.f -- $(MR_FORT) -c molrep_prog.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog.f - molrep_prog1.o: molrep_prog1.f -- $(MR_FORT) -c molrep_prog1.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog1.f - molrep_prog2.o: molrep_prog2.f -- $(MR_FORT) -c molrep_prog2.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog2.f - molrep_subr.o: molrep_subr.f -- $(MR_FORT) -c molrep_subr.f --molrep_sym.o: molrep_sym.f -- $(MR_FORT) -c molrep_sym.f -+ $(MR_FORT) $(FFLAGS) -c molrep_subr.f -+molrep_sym_ccp4.o: molrep_sym.f -+ $(MR_FORT) $(FFLAGS) -c molrep_sym_ccp4.f - main_molrep_mtz.o: main_molrep_mtz.f molrep_version.fh molrep_keywords.fh -- $(MR_FORT) -c main_molrep_mtz.f --molrep_unix.o: molrep_unix.f -- $(MR_FORT) -c molrep_unix.f -+ $(MR_FORT) $(FFLAGS) -c main_molrep_mtz.f -+molrep_unix_ccp4.o: molrep_unix.f -+ $(MR_FORT) $(FFLAGS) -c molrep_unix_ccp4.f - molrep_dummy.o: molrep_dummy.f -- $(MR_FORT) -c molrep_dummy.f -+ $(MR_FORT) $(FFLAGS) -c molrep_dummy.f - - molrep: $(OBJS) -- $(MR_FORT) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) -+ $(MR_FORT) $(FFLAGS) $(LDFLAGS) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) - - # -------------------------------- - diff --git a/sci-chemistry/molrep/files/10.2.34-respect-FLAGS.patch b/sci-chemistry/molrep/files/10.2.34-respect-FLAGS.patch deleted file mode 100644 index d81ec793b..000000000 --- a/sci-chemistry/molrep/files/10.2.34-respect-FLAGS.patch +++ /dev/null @@ -1,61 +0,0 @@ ---- src/makefile 2009-02-27 16:51:46.492890717 +0100 -+++ src/makefile.new 2009-02-27 16:52:18.295619642 +0100 -@@ -5,8 +5,8 @@ - - BIN = $(MOLREP)/bin - --OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym.o molrep_unix.o --OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym.o molrep_unix.o -+OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym_ccp4.o molrep_unix_ccp4.o -+OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym_ccp4.o molrep_unix_ccp4.o - - - all: molrep -@@ -19,31 +19,31 @@ - # ----------------------------- - - molrep.o: molrep.f -- $(MR_FORT) -c molrep.f -+ $(MR_FORT) $(FFLAGS) -c molrep.f - molrep1.o: molrep1.f -- $(MR_FORT) -c molrep1.f -+ $(MR_FORT) $(FFLAGS) -c molrep1.f - molrep2.o: molrep2.f -- $(MR_FORT) -c molrep2.f -+ $(MR_FORT) $(FFLAGS) -c molrep2.f - molrep3.o: molrep3.f -- $(MR_FORT) -c molrep3.f -+ $(MR_FORT) $(FFLAGS) -c molrep3.f - molrep_prog.o: molrep_prog.f -- $(MR_FORT) -c molrep_prog.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog.f - molrep_prog1.o: molrep_prog1.f -- $(MR_FORT) -c molrep_prog1.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog1.f - molrep_prog2.o: molrep_prog2.f -- $(MR_FORT) -c molrep_prog2.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog2.f - molrep_subr.o: molrep_subr.f -- $(MR_FORT) -c molrep_subr.f --molrep_sym.o: molrep_sym.f -- $(MR_FORT) -c molrep_sym.f -+ $(MR_FORT) $(FFLAGS) -c molrep_subr.f -+molrep_sym_ccp4.o: molrep_sym.f -+ $(MR_FORT) $(FFLAGS) -c molrep_sym_ccp4.f - main_molrep_mtz.o: main_molrep_mtz.f molrep_version.fh molrep_keywords.fh -- $(MR_FORT) -c main_molrep_mtz.f --molrep_unix.o: molrep_unix.f -- $(MR_FORT) -c molrep_unix.f -+ $(MR_FORT) $(FFLAGS) -c main_molrep_mtz.f -+molrep_unix_ccp4.o: molrep_unix.f -+ $(MR_FORT) $(FFLAGS) -c molrep_unix_ccp4.f - molrep_dummy.o: molrep_dummy.f -- $(MR_FORT) -c molrep_dummy.f -+ $(MR_FORT) $(FFLAGS) -c molrep_dummy.f - - molrep: $(OBJS) -- $(MR_FORT) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) -+ $(MR_FORT) $(FFLAGS) $(LDFLAGS) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) - - # -------------------------------- - diff --git a/sci-chemistry/molrep/files/10.2.35-respect-FLAGS.patch b/sci-chemistry/molrep/files/10.2.35-respect-FLAGS.patch deleted file mode 100644 index d81ec793b..000000000 --- a/sci-chemistry/molrep/files/10.2.35-respect-FLAGS.patch +++ /dev/null @@ -1,61 +0,0 @@ ---- src/makefile 2009-02-27 16:51:46.492890717 +0100 -+++ src/makefile.new 2009-02-27 16:52:18.295619642 +0100 -@@ -5,8 +5,8 @@ - - BIN = $(MOLREP)/bin - --OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym.o molrep_unix.o --OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym.o molrep_unix.o -+OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym_ccp4.o molrep_unix_ccp4.o -+OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym_ccp4.o molrep_unix_ccp4.o - - - all: molrep -@@ -19,31 +19,31 @@ - # ----------------------------- - - molrep.o: molrep.f -- $(MR_FORT) -c molrep.f -+ $(MR_FORT) $(FFLAGS) -c molrep.f - molrep1.o: molrep1.f -- $(MR_FORT) -c molrep1.f -+ $(MR_FORT) $(FFLAGS) -c molrep1.f - molrep2.o: molrep2.f -- $(MR_FORT) -c molrep2.f -+ $(MR_FORT) $(FFLAGS) -c molrep2.f - molrep3.o: molrep3.f -- $(MR_FORT) -c molrep3.f -+ $(MR_FORT) $(FFLAGS) -c molrep3.f - molrep_prog.o: molrep_prog.f -- $(MR_FORT) -c molrep_prog.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog.f - molrep_prog1.o: molrep_prog1.f -- $(MR_FORT) -c molrep_prog1.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog1.f - molrep_prog2.o: molrep_prog2.f -- $(MR_FORT) -c molrep_prog2.f -+ $(MR_FORT) $(FFLAGS) -c molrep_prog2.f - molrep_subr.o: molrep_subr.f -- $(MR_FORT) -c molrep_subr.f --molrep_sym.o: molrep_sym.f -- $(MR_FORT) -c molrep_sym.f -+ $(MR_FORT) $(FFLAGS) -c molrep_subr.f -+molrep_sym_ccp4.o: molrep_sym.f -+ $(MR_FORT) $(FFLAGS) -c molrep_sym_ccp4.f - main_molrep_mtz.o: main_molrep_mtz.f molrep_version.fh molrep_keywords.fh -- $(MR_FORT) -c main_molrep_mtz.f --molrep_unix.o: molrep_unix.f -- $(MR_FORT) -c molrep_unix.f -+ $(MR_FORT) $(FFLAGS) -c main_molrep_mtz.f -+molrep_unix_ccp4.o: molrep_unix.f -+ $(MR_FORT) $(FFLAGS) -c molrep_unix_ccp4.f - molrep_dummy.o: molrep_dummy.f -- $(MR_FORT) -c molrep_dummy.f -+ $(MR_FORT) $(FFLAGS) -c molrep_dummy.f - - molrep: $(OBJS) -- $(MR_FORT) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) -+ $(MR_FORT) $(FFLAGS) $(LDFLAGS) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) - - # -------------------------------- - diff --git a/sci-chemistry/molrep/metadata.xml b/sci-chemistry/molrep/metadata.xml deleted file mode 100644 index 42f1e996a..000000000 --- a/sci-chemistry/molrep/metadata.xml +++ /dev/null @@ -1,11 +0,0 @@ - - - -sci - - sci@gentoo.org - - - Extra long tests - - diff --git a/sci-chemistry/molrep/molrep-10.2.27.ebuild b/sci-chemistry/molrep/molrep-10.2.27.ebuild deleted file mode 100644 index 74d904d27..000000000 --- a/sci-chemistry/molrep/molrep-10.2.27.ebuild +++ /dev/null @@ -1,55 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI="2" - -inherit base multilib toolchain-funcs - -DESCRIPTION="molecular replacement program" -HOMEPAGE="http://www.ysbl.york.ac.uk/~alexei/molrep.html" -SRC_URI="http://dev.gentooexperimental.org/~jlec/science-dist/${P}.tar.gz" - -LICENSE="ccp4" - -SLOT="0" -KEYWORDS="~amd64 ~x86" - -IUSE="" -RDEPEND=">=sci-libs/ccp4-libs-6.1.1 - virtual/lapack" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/${PN}" - -PATCHES=( - "${FILESDIR}"/${PV}-respect-FLAGS.patch - ) - -src_compile() { - cd "${S}"/src - emake \ - MR_FORT=$(tc-getFC) \ - FFLAGS="${FFLAGS}" \ - LDFLAGS="${LDFLAGS}" \ - MR_LIBRARY="-lccp4f -lccp4c -lmmdb -lccif -L/usr/$(get_libdir) -llapack -lstdc++ -lm" \ - || die -} - -src_test() { - ewarn "Can take a long, long time ..." - ewarn "Go, take a coffee, lunch, go to sleep and have breakfast ..." - cd molrep_check && \ - sed 's:\.\.:\.:g' -i em.bat && \ - mkdir out && \ - mkdir scr && \ - MR_TEST="${S}/bin" bash em.bat && \ - MR_TEST="${S}/bin" bash mr.bat || \ - die "test failed" -} - -src_install() { - dobin bin/${PN} || die - - dodoc readme doc/${PN}.rtf || die -} diff --git a/sci-chemistry/molrep/molrep-10.2.32.ebuild b/sci-chemistry/molrep/molrep-10.2.32.ebuild deleted file mode 100644 index 09be4f2a0..000000000 --- a/sci-chemistry/molrep/molrep-10.2.32.ebuild +++ /dev/null @@ -1,55 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI="2" - -inherit base multilib toolchain-funcs - -DESCRIPTION="molecular replacement program" -HOMEPAGE="http://www.ysbl.york.ac.uk/~alexei/molrep.html" -SRC_URI="http://dev.gentooexperimental.org/~jlec/science-dist/${P}.tar.gz" - -LICENSE="ccp4" - -SLOT="0" -KEYWORDS="~amd64 ~x86" - -IUSE="" -RDEPEND=">=sci-libs/ccp4-libs-6.1.1 - virtual/lapack" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/${PN}" - -PATCHES=( - "${FILESDIR}"/${PV}-respect-FLAGS.patch - ) - -src_compile() { - cd "${S}"/src - emake \ - MR_FORT=$(tc-getFC) \ - FFLAGS="${FFLAGS}" \ - LDFLAGS="${LDFLAGS}" \ - MR_LIBRARY="-L/usr/$(get_libdir) -lccp4f -lccp4c -lmmdb -lccif -llapack -lstdc++ -lm" \ - || die -} - -src_test() { - ewarn "Can take a long, long time ..." - ewarn "Go, take a coffee, lunch, go to sleep and have breakfast ..." - cd molrep_check && \ - sed 's:\.\.:\.:g' -i em.bat && \ - mkdir out && \ - mkdir scr && \ - MR_TEST="${S}/bin" bash em.bat && \ - MR_TEST="${S}/bin" bash mr.bat || \ - die "test failed" -} - -src_install() { - dobin bin/${PN} || die - - dodoc readme doc/${PN}.rtf || die -} diff --git a/sci-chemistry/molrep/molrep-10.2.33.ebuild b/sci-chemistry/molrep/molrep-10.2.33.ebuild deleted file mode 100644 index 09be4f2a0..000000000 --- a/sci-chemistry/molrep/molrep-10.2.33.ebuild +++ /dev/null @@ -1,55 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI="2" - -inherit base multilib toolchain-funcs - -DESCRIPTION="molecular replacement program" -HOMEPAGE="http://www.ysbl.york.ac.uk/~alexei/molrep.html" -SRC_URI="http://dev.gentooexperimental.org/~jlec/science-dist/${P}.tar.gz" - -LICENSE="ccp4" - -SLOT="0" -KEYWORDS="~amd64 ~x86" - -IUSE="" -RDEPEND=">=sci-libs/ccp4-libs-6.1.1 - virtual/lapack" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/${PN}" - -PATCHES=( - "${FILESDIR}"/${PV}-respect-FLAGS.patch - ) - -src_compile() { - cd "${S}"/src - emake \ - MR_FORT=$(tc-getFC) \ - FFLAGS="${FFLAGS}" \ - LDFLAGS="${LDFLAGS}" \ - MR_LIBRARY="-L/usr/$(get_libdir) -lccp4f -lccp4c -lmmdb -lccif -llapack -lstdc++ -lm" \ - || die -} - -src_test() { - ewarn "Can take a long, long time ..." - ewarn "Go, take a coffee, lunch, go to sleep and have breakfast ..." - cd molrep_check && \ - sed 's:\.\.:\.:g' -i em.bat && \ - mkdir out && \ - mkdir scr && \ - MR_TEST="${S}/bin" bash em.bat && \ - MR_TEST="${S}/bin" bash mr.bat || \ - die "test failed" -} - -src_install() { - dobin bin/${PN} || die - - dodoc readme doc/${PN}.rtf || die -} diff --git a/sci-chemistry/molrep/molrep-10.2.34.ebuild b/sci-chemistry/molrep/molrep-10.2.34.ebuild deleted file mode 100644 index 09be4f2a0..000000000 --- a/sci-chemistry/molrep/molrep-10.2.34.ebuild +++ /dev/null @@ -1,55 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI="2" - -inherit base multilib toolchain-funcs - -DESCRIPTION="molecular replacement program" -HOMEPAGE="http://www.ysbl.york.ac.uk/~alexei/molrep.html" -SRC_URI="http://dev.gentooexperimental.org/~jlec/science-dist/${P}.tar.gz" - -LICENSE="ccp4" - -SLOT="0" -KEYWORDS="~amd64 ~x86" - -IUSE="" -RDEPEND=">=sci-libs/ccp4-libs-6.1.1 - virtual/lapack" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/${PN}" - -PATCHES=( - "${FILESDIR}"/${PV}-respect-FLAGS.patch - ) - -src_compile() { - cd "${S}"/src - emake \ - MR_FORT=$(tc-getFC) \ - FFLAGS="${FFLAGS}" \ - LDFLAGS="${LDFLAGS}" \ - MR_LIBRARY="-L/usr/$(get_libdir) -lccp4f -lccp4c -lmmdb -lccif -llapack -lstdc++ -lm" \ - || die -} - -src_test() { - ewarn "Can take a long, long time ..." - ewarn "Go, take a coffee, lunch, go to sleep and have breakfast ..." - cd molrep_check && \ - sed 's:\.\.:\.:g' -i em.bat && \ - mkdir out && \ - mkdir scr && \ - MR_TEST="${S}/bin" bash em.bat && \ - MR_TEST="${S}/bin" bash mr.bat || \ - die "test failed" -} - -src_install() { - dobin bin/${PN} || die - - dodoc readme doc/${PN}.rtf || die -} diff --git a/sci-chemistry/molrep/molrep-10.2.35.ebuild b/sci-chemistry/molrep/molrep-10.2.35.ebuild deleted file mode 100644 index a2432d718..000000000 --- a/sci-chemistry/molrep/molrep-10.2.35.ebuild +++ /dev/null @@ -1,65 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI="2" - -inherit base multilib toolchain-funcs - -DESCRIPTION="molecular replacement program" -HOMEPAGE="http://www.ysbl.york.ac.uk/~alexei/molrep.html" -SRC_URI="http://dev.gentooexperimental.org/~jlec/science-dist/${P}.tar.gz - test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )" - -LICENSE="ccp4" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test extra-test" - -RDEPEND=" - >=sci-libs/ccp4-libs-6.1.1 - sci-libs/mmdb - virtual/lapack" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/${PN}" - -PATCHES=( - "${FILESDIR}"/${PV}-respect-FLAGS.patch - ) - -src_compile() { - cd "${S}"/src - emake clean || die - emake \ - MR_FORT=$(tc-getFC) \ - FFLAGS="${FFLAGS}" \ - LDFLAGS="${LDFLAGS}" \ - MR_LIBRARY="-L/usr/$(get_libdir) -lccp4f -lccp4c -lmmdb -lccif -llapack -lstdc++ -lm" \ - || die -} - -src_test() { - einfo "Starting tests ..." - export PATH="${WORKDIR}/test-framework/scripts:${S}/bin:${PATH}" - export CCP4_TEST="${WORKDIR}"/test-framework - export CCP4_SCR="${T}" - ccp4-run-thorough-tests -v test_molrep || die "nomal test failed" - - use extra-test && \ - cd "${S}"/molrep_check && \ - ewarn "Can take a long, long time ..." && \ - ewarn "Go, take a coffee, lunch, go to sleep and have breakfast ..." && \ - sed 's:\.\.:\.:g' -i em.bat && \ - mkdir out && \ - mkdir scr && \ - MR_TEST="${S}/bin" bash em.bat && \ - MR_TEST="${S}/bin" bash mr.bat || \ - die "extra-test failed" -} - -src_install() { - dobin bin/${PN} || die - - dodoc readme doc/${PN}.rtf || die -} -- cgit v1.2.3-65-gdbad